Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi556g00046 ATGCATGCAAGAGTGCAGCCAGGCGGCCGATCTCCTAAGCCAATGAGTAGTCCAACATCAACATCACAGTTAAAATCTGTTTCAGATAGTGTCCAGAACAGTACTTCTTCATTTCCTTCTCACAGTAAGGGGAGGAAAAGGGAAAGGGTAGATCAAGGCTCTGAGCCTGTCAAGCGAGAACGTTCAACAAAAATTGAAGATGGAGATTCTGGTAATTTTAGGTATGATAACATTTTGAAGACAGAAATTTCTAAAATTACTGAAAAGGGAGGGCTTGTTGATACTCAAGGAGTTGAGAAATTAGTACAGCTGATGGTTCCTGATAGAACTGGGAAGAAGATAGATTTAGCTAGCCGGTCATCGCTTGCAGCTGTTATTGCAGCAACAGATAAATTTGATTGTCTTAGTCAGTTTGTGCAGCTGAGGGGTTTGCCTGTACTTGATGAATGGCTCCAAGAGGTCCATAAAGGGAAGGTTGGTGATGGTATTGGGTCCAGGGATGGTGATAAATCTGTTGAGGAATTTCTCTTGGTGTTACTTCGGGCACTTGATAAGCTTCCAGTGAATCTTCAGGCTCTACAGATGTGCAACATCGGTAAATCTGTGAATCATCTGCGAACCCATAAAAACACTGAAATTCAGAGGAAAGCAAGAGGTTTAGTGGACACATGGAAGAAACGGGTTGAAGCTGAAATGAATATAAATGATGCAAAATCTGGTTCTGGTCCCACTGTTGCCTGGCCTGCCAAGTCACGTCTTCCTGATGTTGGTCAAGGTGGGAATAGACATTCAGGTGGGTCATCTGATGCTGCCATGAAGAGTTCAGTTACACAACTTTCTGCATCCAAAATTGCCTCTGTTAAGATTGTCCAGGGAGATAATGCTACTAGATCAGCATCAACATCTGCATTTCCAGGGCCTGCAAAGTCAGTGCCCTCACCTCGTGTTGCTGCTGTCAGTGGCGGTTCTGATAATCTTATGGCAAATGCTAGGGATGAGAAAAGTAGTAGTTCTAGTCATTCTCACAATAATAGTCAATCTTGTTCTAGTGACCATGCTAAAATCGGGGGCCTTTCAGGAAAGGAGGATGCCAGAAGCTCTACTGCAATGAGTGCAAATAAGGTATCAGGAGGCTCTTCAAGACATCGGAAATCTATTAATGGATTCTCAGGTTCAGCTCTATCTGGAGGGCAAAGGGAAACAGGATCAAGTAGGAATTCGTCCTTGCACAAAAAATTAACTTCAGAGAAAATATCTCAGTCTGGATTAATGGATAAAACAGTTGATGAAACTTCTCTTGAGGGGAATACACCCAAACTGATTGTTAAAATTCCCAACCAGGGTAGAAGTCTCGTACAAAGGGCCAGTGCTGGTTCTCTTGATGATCCTACAATCAAGAATAGTCGAGCCTCTTCTCCTGTCCTTTCAGAAAAGCATGATCAGTTTGATCACGTCTCAAATGAAAAGAGTGACTTATATCGAGCCAATATTGGCTCAGATATTAAAACTGAATCTTGGCAGAGTAATGATTTCAAAGATGTATTGACTGGCTCTGATGAGGGTGATGGATCGCCTGCTGCAGTTACTGATGAAGAGCGCTGTAGGACAGGTGATGATTGTAAGAAACCATTAGAAGTATCAAAGGCTGCTTCCTCATCATCTGGAAATGAAAACAAAGCTGGGAATTTGCAGGATGCTTCTTACAGCTCCATAAATGCTTTAATAGAAGGTGTTAAGTACTCTGAAGCTGATGATGTTGGAATGAATCTTCTTGCTAGTGTGGCTGCTGAAGAGATCTTGAAGTCTAACTTGATAACTCCAGCTAGATTTCCAGAGAGAAACACTACTGCTATTGAACAGTTGTGCACAGGGAATGGTGTAGTCAAGTCCTCTGAAGAAAATCTTGTCCGGGGTGAATGTCAATCAAATAATGGTCTTGATTCTGAACAAAAGAATCAGGGTTCTATGTCAGGTGATTTAGGGATGAATGATGATAATAATTCTGATTCTCGGCCATCTGTAGGGAACGCTGCAAGAGAGCTAAATGAGCAAATTAATGCATGCAGTATGGATTTGCAACATGTTACTGAGGCTAACTTAGAAAGCAAAGGAAAATTAAATGAAAAACCTATTTCTACTCCATTTGGTGGTCTTCCTGAAAGCAGCACTGTGCAAGAAGCTAGAGATGGTGACTGTAGTGAGCAGCTCAAGGAGGAGGCTGTCAGGGGAGTGAATGCTGGTGAAATTCTTGATGTTAAGGTTAGTGGTGTTGTGGGAGTGGTGGAAGAAATTGAAAAGTTGCCATGTTCTGCGGAAGTGAATGTAAAGGGTGATAACTGTACTACTGAAGGATCAAGCGGGGGTGGACAGACAGCTCAGAAGCCTTCTGCCATTCTTATGCAATCTGATTCAGCAAGAGGAGCAGATGAGAATGTACTCCATTCTTGTGTTGATAAGGTTTCTGAAGATGCCAATGAACGGGAATATGAAAAAACTCATGATATGGCTACTGAGAATCATGCTAGTCAGTCTAAAAAACAAAAAAATGAGTGTGAAAGCAATGCCTTGATGATGCCTGAGAATAAAGGTTTATGTTCCAGTGCGACTGGTTTTGCTGCTGAACATGTGGGGGAGAATTCAGAAATGAAAGAGGTTCATGACCAAGATGTTGGAGTGATACTTAACAAAGCTTCATCTAGCTTTCGTTCACAAGAAATGGACAAGCATCTGGATTCTAAAGGATCAAAATTGACTGCCATGGAAGTGGAAGAGGCTGAGGAGTGCACCTCTACCACTGCAGATGCTCCTTCCATGTCTGCTGCTGCTGCTTTATCAGATGCGGATGCAAAGATTGAATTTGATTTAAATGAAGGGTTTAATGCAGATGATGGAAAATGTGGTGAGTTCAACAGCATTACCACTTCTGGATGTGCGCCTGCTGTTCAATTGATTAGTCCTGTGCCATTTCCTGCTCCATCTATGTCTTGTGGTATTCCTGCCTCAATCACTGTGGCTGCTGCTGCAAAGGGGCCCTTTGTACCACCTGAAGATTTATTGAGAAGTAAAGGTGAACTTGGTTGGAAGGGATCAGCGGCCACTAGTGCATTCCGGCCAGCTGAGCCCAGGAAAGTTCTGGAAATGCCTCTTGGTACACAAACTACCCCTATTCCTGATGCTGCAGCTGGAAAGCAGAGTCGACCACCATTGGATATTGACTTAAATGTGCCTGATGAAAGAATCCTTGATGATGTTTCTTCTCAAATTTGTGCTCGTCAGACAGATGTTGTATCTCTTGCAGCCGATGGTCATGAGCCAGTATGCAGTAAGACGGCTTCACCTGTTCGGTGCTCTGGAGGGCTTGGTCTTGACTTGAACCAAGTGGATGAAGCTTCTGATGTGGGTAATTGCTCCATGAGTAGTAGTCATAAAATAGATGTACCACTTATGCAGGTGAAATCATCATTGAGTGGTCCTCCAAGCAGAGACATGAGTGTCCACAGGGACTTTGATTTGAATAATGGACCTTCAGCTGATGAAGTTACCACTGAACCATCTTTGTTCTCTCAGCATGCCAGGATCAGTGTGCCATCTCAACCACCTGTTTTTGGACTTAGGATGAGTACTGCAGAGCCAGGGAACTCCTCTTCATGGCTTCCTTCTAGTGGCAACACCTATTCTGCTGTCACAATATCTTCAATTATGCCTGATAGAGGGGATCAGCCCTTTTCTATTGTTGCCCCTAATGGGCCACAAAGATTGTTGACTCCTGCCACTGGTGGCAACCCATTTGGATCTGATATTTATAGGGGGCCAGTATTGTCATATCCATCTGCTCCATTCGAATATCCTGTCTTCCCTTTTAATTCCAGCTTTCCCCTTCCATCAGCATCATTTTCTGCTGGACCAACTACTTATGTATATTCAACGCCAGGTAGTCGGCTTTGCTTCCCTGCAGTGAATTCACAGTTAATGGGGCCTGCCGGCACAGTTTCATCCCATTACCCTAGGCCTTATGTTGTTGGCCTTCCAGATGGTAGCAATAGTAGTAGTAGTGCTGAGACCAGTAGGAAATGGGCTAGGCAGGGTTTAGATCTTAATGCTGGACCTGGAGGTTCAGACATAGAGGGGAGAGATGAGAGCTCATCTCTTCCATCAAGGCAACTTTCTGTTGCCTGTTCACAGGCCATAGCTGAGGAGCATGCAAGGATTCAGCTGGCTGGTAGTGTTCATAAGAGGAAGGAGCCTGATAGTGGCTGGGATGGCTACAAGCAATCCTCATGGCAATAG 4287 0.4381 MHARVQPGGRSPKPMSSPTSTSQLKSVSDSVQNSTSSFPSHSKGRKRERVDQGSEPVKRERSTKIEDGDSGNFRYDNILKTEISKITEKGGLVDTQGVEKLVQLMVPDRTGKKIDLASRSSLAAVIAATDKFDCLSQFVQLRGLPVLDEWLQEVHKGKVGDGIGSRDGDKSVEEFLLVLLRALDKLPVNLQALQMCNIGKSVNHLRTHKNTEIQRKARGLVDTWKKRVEAEMNINDAKSGSGPTVAWPAKSRLPDVGQGGNRHSGGSSDAAMKSSVTQLSASKIASVKIVQGDNATRSASTSAFPGPAKSVPSPRVAAVSGGSDNLMANARDEKSSSSSHSHNNSQSCSSDHAKIGGLSGKEDARSSTAMSANKVSGGSSRHRKSINGFSGSALSGGQRETGSSRNSSLHKKLTSEKISQSGLMDKTVDETSLEGNTPKLIVKIPNQGRSLVQRASAGSLDDPTIKNSRASSPVLSEKHDQFDHVSNEKSDLYRANIGSDIKTESWQSNDFKDVLTGSDEGDGSPAAVTDEERCRTGDDCKKPLEVSKAASSSSGNENKAGNLQDASYSSINALIEGVKYSEADDVGMNLLASVAAEEILKSNLITPARFPERNTTAIEQLCTGNGVVKSSEENLVRGECQSNNGLDSEQKNQGSMSGDLGMNDDNNSDSRPSVGNAARELNEQINACSMDLQHVTEANLESKGKLNEKPISTPFGGLPESSTVQEARDGDCSEQLKEEAVRGVNAGEILDVKVSGVVGVVEEIEKLPCSAEVNVKGDNCTTEGSSGGGQTAQKPSAILMQSDSARGADENVLHSCVDKVSEDANEREYEKTHDMATENHASQSKKQKNECESNALMMPENKGLCSSATGFAAEHVGENSEMKEVHDQDVGVILNKASSSFRSQEMDKHLDSKGSKLTAMEVEEAEECTSTTADAPSMSAAAALSDADAKIEFDLNEGFNADDGKCGEFNSITTSGCAPAVQLISPVPFPAPSMSCGIPASITVAAAAKGPFVPPEDLLRSKGELGWKGSAATSAFRPAEPRKVLEMPLGTQTTPIPDAAAGKQSRPPLDIDLNVPDERILDDVSSQICARQTDVVSLAADGHEPVCSKTASPVRCSGGLGLDLNQVDEASDVGNCSMSSSHKIDVPLMQVKSSLSGPPSRDMSVHRDFDLNNGPSADEVTTEPSLFSQHARISVPSQPPVFGLRMSTAEPGNSSSWLPSSGNTYSAVTISSIMPDRGDQPFSIVAPNGPQRLLTPATGGNPFGSDIYRGPVLSYPSAPFEYPVFPFNSSFPLPSASFSAGPTTYVYSTPGSRLCFPAVNSQLMGPAGTVSSHYPRPYVVGLPDGSNSSSSAETSRKWARQGLDLNAGPGGSDIEGRDESSSLPSRQLSVACSQAIAEEHARIQLAGSVHKRKEPDSGWDGYKQSSWQ 1428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi556g00046 1428 MobiDBLite consensus disorder prediction 12 40 - -
Sebi556g00046 1428 MobiDBLite consensus disorder prediction 1406 1428 - -
Sebi556g00046 1428 MobiDBLite consensus disorder prediction 235 274 - -
Sebi556g00046 1428 SMART TFS2_5 151 230 IPR003617 GO:0005634
Sebi556g00046 1428 MobiDBLite consensus disorder prediction 454 487 - -
Sebi556g00046 1428 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 133 242 IPR035441 -
Sebi556g00046 1428 CDD TFIIS_I 153 229 - -
Sebi556g00046 1428 ProSiteProfiles TFIIS N-terminal domain profile. 145 231 IPR017923 -
Sebi556g00046 1428 MobiDBLite consensus disorder prediction 512 539 - -
Sebi556g00046 1428 MobiDBLite consensus disorder prediction 1 71 - -
Sebi556g00046 1428 MobiDBLite consensus disorder prediction 639 675 - -
Sebi556g00046 1428 MobiDBLite consensus disorder prediction 701 724 - -
Sebi556g00046 1428 MobiDBLite consensus disorder prediction 329 353 - -
Sebi556g00046 1428 MobiDBLite consensus disorder prediction 293 307 - -
Sebi556g00046 1428 Pfam TFIIS helical bundle-like domain 179 228 IPR017923 -
Sebi556g00046 1428 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 98 232 IPR035441 -
Sebi556g00046 1428 MobiDBLite consensus disorder prediction 1362 1388 - -
Sebi556g00046 1428 MobiDBLite consensus disorder prediction 822 850 - -
Sebi556g00046 1428 MobiDBLite consensus disorder prediction 41 71 - -
Sebi556g00046 1428 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 1 1428 - -
Sebi556g00046 1428 MobiDBLite consensus disorder prediction 293 431 - -
Sebi556g00046 1428 MobiDBLite consensus disorder prediction 364 431 - -
Sebi556g00046 1428 MobiDBLite consensus disorder prediction 460 475 - -
Sebi556g00046 1428 MobiDBLite consensus disorder prediction 822 847 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi556g00046 Sebi-Chr556 671911 676197 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Sebi556g00046 Med26 2.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi556g00046 - - ccaj:109810746 2160.96