Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi556g00035 ATGGGTGGCAATGGTAAGCACAGGTGGAAAATCTCCTTCCATCGTTCTTCCTCTCACTCAAAGCTGGAACCCAAGCACCCTCCCAAGGAGTTCCTATGCCCGATTTCCGGGTCATTAATGTCCGACCCGGTCGTCGTCGCTTCGGGTCAAACATTCGAACGCGTCGCCGTTCAAGTCTGTACGGATTTAAAGTTCATCCCCAACCTAGAAGACGGGTCCCGACCCGATTTCTCAACGGTCATCCCCAATTTGGCCATCAAAACGACGATTCTCAACTGGTGCGACAAATCCGGCACCCAACGCCCTCACGCACCGGATTACGCCTCCGTGGAGAGGGTCGTCCGGGAAGCAATGGCGGCGGCGCAGGAGGACCGAATTAGGGTTTCTGAGAGGGAGCTGCTGAAAGCCGTGGCGGATAATCCTCCGGTAATTTTCTCCCACGCCGCCACCGAGTTAGGGCCTCGAGTCAACCACTTCAACTCGGGGTCGTCCTCGGAGGAATCGGTTATCATCGCGGCGAGTCCAGGAACACCCTTGCCTCTCACGCTTCGCCCAACGTGCTTCTCTTCCTCTTCCTCTTCCTCCTGTGAGATCGAAATCCAAAACCCTAGCGTTCCAGCCTCGGAAGAAGAAGAGAAATTAGTGAAGAAGATGAAAAGTAACGAGGTGTTCGAGCAAGAAGATGGCGTGGTCTCGCTGAGGAGCATCACGAAGAACAGAGAAGAAGCTAGGGTTTCGCTCTGCACGCCGCGGATTCTTTCGGCGCTGCGTCCGTTGATTCCATCGCGATACGTCGTCGTTCAGGTCAACGCTGTAGCTTCTCTGGTCAACCTTTCTCTGGAGAAATCGAATAAGGTGAGGATCGTGAGGTCAGGGTTCGTTCCTTATCTCGTCGACGTGTTGAAGGGAGGATTCAGTGAATCGCAGGAGCACGCTGCGGGCGCGCTCTTTAGCTTGGCTTTGAATGATGATAACAAGATGGCCATTGGAGTCCTCGGCGCGTTGCAGCCACTAATGCACGCGCTGAGGTCAGAGTCTGAGCTGACTCGGCATGACTCGGCGCTGGCGCTGTACCACCTCACGCTGGTTCAGAGCAACCGAGTCAAGCTGGTGAAACTCGGGGTGGTCCCCACGCTGCTTTCGATGGTGATGACGGGGAACCTGGCGAGCCGGGTGCTGCTGATTCTGTGCAACCTGGCGGTGTCAATGGAGGGACGGACGGCGATGCTGGATGCCAACGCGGTGGAGTGTTTGGTGGGGTTGCTGAGGGGGAAGGAGTTTGACTCAGAGGCGACTCGGGAGAATTGTGTGGCGGCGTTGTATGCGCTGAGTCATGGGAGCTTGAGGTTCAAAGGGTTGGCGAAGGAGGCAAGGGCTGTGGAGGTTTTGAGGGAGATTGAGGAAACGGGAACGGAGAGGGCTAGGGAGAAGGCTCGGAGGGTGTTGCAGATGATGAGGACTGTGGGAGATGATGAGGATCAAGATGGGTCTGAGTTTGATAGCCTTTTTGAATCGGGTGGGTTGGCTCGAACTCGCTACCGAGTTGCTGGTGCCAGGAGTACCACCAACCTTGTCAACACAACCACATTTTAG 1593 0.5574 MGGNGKHRWKISFHRSSSHSKLEPKHPPKEFLCPISGSLMSDPVVVASGQTFERVAVQVCTDLKFIPNLEDGSRPDFSTVIPNLAIKTTILNWCDKSGTQRPHAPDYASVERVVREAMAAAQEDRIRVSERELLKAVADNPPVIFSHAATELGPRVNHFNSGSSSEESVIIAASPGTPLPLTLRPTCFSSSSSSSCEIEIQNPSVPASEEEEKLVKKMKSNEVFEQEDGVVSLRSITKNREEARVSLCTPRILSALRPLIPSRYVVVQVNAVASLVNLSLEKSNKVRIVRSGFVPYLVDVLKGGFSESQEHAAGALFSLALNDDNKMAIGVLGALQPLMHALRSESELTRHDSALALYHLTLVQSNRVKLVKLGVVPTLLSMVMTGNLASRVLLILCNLAVSMEGRTAMLDANAVECLVGLLRGKEFDSEATRENCVAALYALSHGSLRFKGLAKEARAVEVLREIEETGTERAREKARRVLQMMRTVGDDEDQDGSEFDSLFESGGLARTRYRVAGARSTTNLVNTTTF 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi556g00035 530 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 106 IPR013083 -
Sebi556g00035 530 FunFam RING-type E3 ubiquitin transferase 209 485 - -
Sebi556g00035 530 SMART Ubox_2 30 93 IPR003613 GO:0004842|GO:0016567
Sebi556g00035 530 Pfam U-box domain 28 95 IPR003613 GO:0004842|GO:0016567
Sebi556g00035 530 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 292 329 IPR000225 GO:0005515
Sebi556g00035 530 PANTHER U BOX DOMAIN-CONTAINING 21 486 - -
Sebi556g00035 530 MobiDBLite consensus disorder prediction 1 26 - -
Sebi556g00035 530 SMART arm_5 240 280 IPR000225 GO:0005515
Sebi556g00035 530 SMART arm_5 281 321 IPR000225 GO:0005515
Sebi556g00035 530 SMART arm_5 402 445 IPR000225 GO:0005515
Sebi556g00035 530 SMART arm_5 322 362 IPR000225 GO:0005515
Sebi556g00035 530 FunFam RING-type E3 ubiquitin transferase 9 101 - -
Sebi556g00035 530 Pfam Armadillo/beta-catenin-like repeat 322 361 IPR000225 GO:0005515
Sebi556g00035 530 Gene3D - 208 486 IPR011989 -
Sebi556g00035 530 SUPERFAMILY ARM repeat 212 485 IPR016024 -
Sebi556g00035 530 ProSiteProfiles U-box domain profile. 26 100 IPR003613 GO:0004842|GO:0016567
Sebi556g00035 530 SUPERFAMILY RING/U-box 14 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi556g00035 Sebi-Chr556 497536 499128 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi556g00035 1 517 U-box Gene Family AT5G65200 59.524 0.0 593
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi556g00035 - - gmx:100784564 779.63