Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi556g00013 ATGTCGTCTTCTACAACCTCTTCCAGGCACCATACCTATAATCGAAAGCAGAAATCTCTCGGCCTCTTGTGTACCAATTTCTTGAGCTTGTATAACAAAGACGGCATCCACTTGATCGGTCTCGACGACGCCGCTTCACGATTAGGGGTTGAACGACGCCGGATCTATGATATAGTTAATGTCTTGGAGAGTGTTGGTGTGCTTGCTAGAAGAGCTAAGAATCAATACACTTGGAAAGGATTTGCGGCCATTCCCGGAGCTTTACAGGATCTCAAGGCTGAGGGTTTGAGGGAGAATCCCACTACTTTCGATGTTGCCAATGACAGTGCAAAAATGTCTGATGACGAGGATGATGCAGAAGCAATATCCAATCCCAGTACTGAAAGTCAGAATGACAAGTCAAATGCTGATTGTGCCAATATTGTCAAATCTTCGAAGAATGAAAACAGAAGGGAAAAGTCTCTGGCACTGCTTACTCAGAATTTTGTCAAGCTCTTTGTCTGCTCTAATATTGAAATGATCTCCCTTGACGAAGCTGCAAAATTGTTGCTGGGAAATGCCCATAACACATCAATCATGAGAACAAAAGTCAGACGCCTATATGATATTGCAAATGTTCTATCCTCCATGAACCTAATTGAGAAGACCCATACAGCAGACACAAGAAAACCAGCATTCAGGTGGTTGGGTTTGAAAGGGAAGACATGGAGCGACTCGGTTGACTCAGCTCACAATTCAAATGTCAACGAGTCAAGGAAAAGGATGTTTGGAAATGACGTCACAAACATAAGTTTTAAGAGGAATAAAGTTGATTCGTCCATGGATGGGGGATTTTACAAGAACTCTAATATGCAAAATAAACAGGAAAATCATAGTTGCCGAGCCCAACCAGGGACAAGCGACTCAAAACAAGATGCAAAACAGACTTCAAGTTGCTATCAGTTTGGCCCTTTTGCTCCAGCTTATGCGCCTAAAGTTGGAGCCTCTGATAATGTTAAGCAGGCGCATGATTGGGAGAGTCTTGCAGCTGCCCATTGTCCTCAGTATCAAAATCAAGGTAACATTTCATCTCTGCGTAACATAGATACGGTGACTGGTGATTGGCTCGGACGAGAAATTGGTGGCGATCCTTGTGTCGAAAGTCTTCCTAGTGATATGTGGAGGCTAGGCGACATGTTTCGTTGA 1185 0.4354 MSSSTTSSRHHTYNRKQKSLGLLCTNFLSLYNKDGIHLIGLDDAASRLGVERRRIYDIVNVLESVGVLARRAKNQYTWKGFAAIPGALQDLKAEGLRENPTTFDVANDSAKMSDDEDDAEAISNPSTESQNDKSNADCANIVKSSKNENRREKSLALLTQNFVKLFVCSNIEMISLDEAAKLLLGNAHNTSIMRTKVRRLYDIANVLSSMNLIEKTHTADTRKPAFRWLGLKGKTWSDSVDSAHNSNVNESRKRMFGNDVTNISFKRNKVDSSMDGGFYKNSNMQNKQENHSCRAQPGTSDSKQDAKQTSSCYQFGPFAPAYAPKVGASDNVKQAHDWESLAAAHCPQYQNQGNISSLRNIDTVTGDWLGREIGGDPCVESLPSDMWRLGDMFR 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi556g00013 394 PANTHER TRANSCRIPTION FACTOR E2F 5 349 IPR015633 GO:0000978|GO:0006357
Sebi556g00013 394 SMART E2F_TDP_2 150 230 IPR003316 GO:0005667|GO:0006355
Sebi556g00013 394 SMART E2F_TDP_2 15 80 IPR003316 GO:0005667|GO:0006355
Sebi556g00013 394 Gene3D - 10 82 IPR036388 -
Sebi556g00013 394 Gene3D - 144 232 IPR036388 -
Sebi556g00013 394 FunFam E2F transcription factor 8 10 82 - -
Sebi556g00013 394 SUPERFAMILY "Winged helix" DNA-binding domain 152 231 IPR036390 -
Sebi556g00013 394 FunFam E2F transcription factor-like E2FE 145 232 - -
Sebi556g00013 394 SUPERFAMILY "Winged helix" DNA-binding domain 14 78 IPR036390 -
Sebi556g00013 394 Pfam E2F/DP family winged-helix DNA-binding domain 16 80 IPR003316 GO:0005667|GO:0006355
Sebi556g00013 394 Pfam E2F/DP family winged-helix DNA-binding domain 152 230 IPR003316 GO:0005667|GO:0006355
Sebi556g00013 394 MobiDBLite consensus disorder prediction 123 137 - -
Sebi556g00013 394 MobiDBLite consensus disorder prediction 103 137 - -
Sebi556g00013 394 MobiDBLite consensus disorder prediction 274 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi556g00013 Sebi-Chr556 151997 155298 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi556g00013 10 352 E2F-DP Transcription Factor Family AT3G48160 57.790 7.29e-121 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Sebi556g00013 E2F_TDP 1.1e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi556g00013 K09391 - gmx:100818090 508.064