Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi554g00035 ATGGAAGAAGGCATGAAGAACATTCAGCCAGTTGGGGTTTTAGGTTACAACAGGTGCTGTGTGAGGGTTTTACGGATCCTCCTCGTTCACGAACTAACACCCTTCAACTCCAAGTTTTGTTGTTGTTGGGTGATTATGGCTTTTTTCTCTGGAGTTCAACGCTTCATTCGCCACTCCCCACTTCTTCACTCTATTCGTTTCAGTTCAACTCTCACTTCCCCCAAACTTTTCGTCAGCGGTCTTTCAAGACTGACAACAGATCAAAAACTTACAGAAGCATTTGCTCCTTTTGGGCAGCTGATGGAAGCTAAGGTGATAACCGATAGAGTGTCTGGAAGATCGAAGGGTTTTGGTTTTGTAACTTATGCAACCATAGAAGAAGCTGAAAAGGCAAGAGAAGGAATGAATGCTAAATTTTTGGATGGATGGGTTATATTTGTTGATCCTGCCAAACCAAGAGAGCCAAGACCTCCTCAGCAATCACAGTCTCAGCCCTCTGAATCAGGTTTCACAGTTAACAAAACAATTGGCTGGTGTGGTTGA 543 0.4365 MEEGMKNIQPVGVLGYNRCCVRVLRILLVHELTPFNSKFCCCWVIMAFFSGVQRFIRHSPLLHSIRFSSTLTSPKLFVSGLSRLTTDQKLTEAFAPFGQLMEAKVITDRVSGRSKGFGFVTYATIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRPPQQSQSQPSESGFTVNKTIGWCG 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi554g00035 180 PANTHER NUCLEOLAR PROTEIN 8 64 179 - -
Sebi554g00035 180 SMART rrm1_1 75 148 IPR000504 GO:0003723
Sebi554g00035 180 SUPERFAMILY RNA-binding domain, RBD 73 172 IPR035979 GO:0003676
Sebi554g00035 180 FunFam RNA binding protein 62 174 - -
Sebi554g00035 180 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 74 152 IPR000504 GO:0003723
Sebi554g00035 180 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 76 142 IPR000504 GO:0003723
Sebi554g00035 180 Gene3D - 67 174 IPR012677 -
Sebi554g00035 180 MobiDBLite consensus disorder prediction 151 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi554g00035 Sebi-Chr554 530330 534282 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi554g00035 76 167 Eukaryotic Initiation Factors Gene Family AT3G16380 37.895 2.98e-12 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi554g00035 - - gmx:100306326 214.157