Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi554g00033 ATGACTTCATTCTTGAAGCCAGAGAATGCCCTAAAGAGGGTGGAAGAATTAATCAATGTTGGTCAGAAGCAGGATGCCTTGCAGACTCTTCATGACCTTATTACTTCGAAAAGATACCGAGCATGGCAGAAGACACTTGAAAGGATTATGTTCAAGTATGTAGAACTGTGTGTAGACATGCGTAAAGGACGGTTTGCAAAGGATGGTCTCATTCAGTATCGTATCATATGTCAGCAAGTGAATGTTAGTTCGCTGGAGGAGGTGATCAAGCATTTCATGCACCTGTCGACTGAGAAAGCTGAACAAGCTCGTAGCCAGGCACAGGCATTAGAAGAAGCCTTGGATGTTGATGACTTAGAGGCTGATAAAAGGCCAGAGGACTTGATGCTAAGCTATGTCAGTGGTGAGAAAGGAAAGGACAGGTCCGACAGGGAGCTTGTTACCCCATGGTTTAAATTCCTATGGGAAACTTACAGGACAGTCCTTGAAATATTGCGGAACAACTCAAAATTGGAATCCTTATATGCTATGACAGCCCATCGAGCCTTCCAGTTCTGTAAGCAATATAAACGAACAACAGAATTTCGAAGACTTTGCGAGATCATAAGAAACCATTTAGCCAATCTTAATAAATATCGGGACCAACGAGACCGGCCTGATCTTTCTGCTCCTGAGAGCTTGCAACTATATCTTGATACAAGATTTGAGCAGCTGAAAATTGCCACTGAACTTGAACTCTGGCAGGAAGCCTTCCGATCAGTTGAAGATATACATGGACTGATGTGCATGGTCAAGAAAGTCCCTAAGCCATCCTTGATGGTTGTTTACTATGTTAAGCTGACAGAAATATTTTGGATATCATCAAGTCATCTATATCATGCATATGCATGGTTCAGGCTCTTTTTATTACAAAAAAGCTTCAATAAAAATCTGAGTCAGAAGGATTTGCAATTAATAGCATCATCTGTTGTTCTGGCTGCACTTTCAGTGCCACCTCATGATCACACTCATGGTGCATCTCATTTGGAATTGGAGCATGAAAAGGAGAGAAACTTGAGGATGGCCAATCTTATTGGCTTTAATCTTGAAACAAAACCTGAGAGCAGAGAAGTGCTCTCGAGGTCATCACTTCTTGCTGAACTGGCATCGAAGGGTGTGATGTCTTGTGTAACTCAGGAAGTGAAGGACATATACTATCTTCTGGAACATGAATTTCTTCCCTCAGATCTTGCACTAAAAGTGCTGCCCTTGTTAACTAAAATTTCAAAATTAGGGGGCAAGCTTTCCACCGCTTCATCTGTTCCAGAGGTTCATTTGTCTCAGTATGTACCAGCACTGGAAAAGCTAGCTACCTTGAGGTTGCTACAGCAGGTGTCTAATGTGTACAAGACAATGAAGATTGAAACCTTATCTGGGATGATCCCCTTCTTCGATTTTTCTGTAGTGGAAAAGATTTCTGTGGATGCTGTTAAGCAGAAGTTTGTATCGATGAAAGTTGATCACATGAAAAATGTTGTCATTTTCTGTAAAATGAATCTTGAGTCTGATGGCTTAAGGGATCACTTGGCAAATTTTGCTGAACAATTGAATAAGGCAAGACAAATGATTTATCCTCCTGATACGAAACCATCTAAACTTGGGGCTATGCTTCCAACTTTGACAGAGGTTGTCGCCAAAGAACACAAGAGGCTCCTTGCTCGAAAATCGATTATCGAGAAGAGGAAAGAAGAACAAGAACGCCAGCTTCTTGAAATGGAACGTGAGGAGGAATCAAAGAGGTTAAAACTACAAAAGATAACTGAAGAAGCAGAGCAAAGAAGGCTTGCAACTGAGTATGAGAGGATGAAGAATCAGAGAATCCTCAGGGAAATAGAGGAAAGAGAAAATGAAGAAGCTCAAGCTTTACTTCAGGAAGCTGAGAAGCGAATCACTAAGGCGAAAGGTAAAAGGAGGCCAATCATAGAGGGGGACAAAATGACCAAGCAGGCATTGATGGAGTTGACATTGACTGAACAACTCCGGGAAAGACAGGAGATGGAAAAGAAACTGCAAAAATTAGCTAAAACCATGGATTATCTGGAAAGAGCAAAAAGAGAGGAGGCTGCTCCCCTGATTGAAGCTGCATATCAACAGCGCCTAGTGGAAGAGAGGATTCTTCATGAGCGTGAGCAACAACAAGAGGTTGAACTGAGCAAACAGAGGCACGAGGGAGACCTTAAGGAGAAGGAGAGGCTTGTTCGAATGATGAGCAATAAAGAGATATATCAAGCGAGAGTTGTCAGTCATCGCCAAGCAGAATTTAACAGATTGAAGAGAGAAAGGGAGGAGCGAATCTCTAGGATTTTACAGTCCAGGAGGCAGGAAAGAGAAAAAATGAGGAAGTTGAAGTTTTATCTTAAGTTAGAAGAAGAGAGACAACAAAAATTGCATGAGGAAGAAGAAGCTCGGAAGCGTGAAGCAAACGGTTATTGCACTGTGGAATGTGCCATCTTTTACAGTGCAGTAGCATATCATCTTCTGTGCCGTGTTTTCCTAACTTGCGTTTTCAAATACTCAGAGGCTGAGAGGAAGAAGAAGGAAGAGGCTGAACGCTTAGCAAAATTGGCTGAGATAGCTGAAAAGCAGAGGCAAAGAGAGCGGGAACTTGAAGAAAAGGAGAAACAAAGGAGAGAAGCATTGTTGGGTAAATCTGCTGAACCCGCTTTTAAGCCTTCTGAGCCTCCTGCACGTCCATTGGATTCTGCACCCGCTGCGGCTGCGGCTGCCGCAGCCCCAGCTCCAGCCCCAGGTAAATACGTCCCTAAGTTCAGGAGAGAAAGAACTGAAAGCACAGCAGCTGCTCCTCCTCCAGAAACAGATCGTTGGAATAACAGCAGCAGCAGGCCAGATGGTGGTGACAGGTGGCGTAGTGATGATCGCAGAACTGCATTTGGTTCTGGTTCTAGGTCATCTTCTACTTGGTCATCTTCCAGGAATCGTGATCGTTGA 2988 0.4321 MTSFLKPENALKRVEELINVGQKQDALQTLHDLITSKRYRAWQKTLERIMFKYVELCVDMRKGRFAKDGLIQYRIICQQVNVSSLEEVIKHFMHLSTEKAEQARSQAQALEEALDVDDLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLESLYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLSAPESLQLYLDTRFEQLKIATELELWQEAFRSVEDIHGLMCMVKKVPKPSLMVVYYVKLTEIFWISSSHLYHAYAWFRLFLLQKSFNKNLSQKDLQLIASSVVLAALSVPPHDHTHGASHLELEHEKERNLRMANLIGFNLETKPESREVLSRSSLLAELASKGVMSCVTQEVKDIYYLLEHEFLPSDLALKVLPLLTKISKLGGKLSTASSVPEVHLSQYVPALEKLATLRLLQQVSNVYKTMKIETLSGMIPFFDFSVVEKISVDAVKQKFVSMKVDHMKNVVIFCKMNLESDGLRDHLANFAEQLNKARQMIYPPDTKPSKLGAMLPTLTEVVAKEHKRLLARKSIIEKRKEEQERQLLEMEREEESKRLKLQKITEEAEQRRLATEYERMKNQRILREIEERENEEAQALLQEAEKRITKAKGKRRPIIEGDKMTKQALMELTLTEQLRERQEMEKKLQKLAKTMDYLERAKREEAAPLIEAAYQQRLVEERILHEREQQQEVELSKQRHEGDLKEKERLVRMMSNKEIYQARVVSHRQAEFNRLKREREERISRILQSRRQEREKMRKLKFYLKLEEERQQKLHEEEEARKREANGYCTVECAIFYSAVAYHLLCRVFLTCVFKYSEAERKKKEEAERLAKLAEIAEKQRQRERELEEKEKQRREALLGKSAEPAFKPSEPPARPLDSAPAAAAAAAAPAPAPGKYVPKFRRERTESTAAAPPPETDRWNNSSSRPDGGDRWRSDDRRTAFGSGSRSSSTWSSSRNRDR 995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi554g00033 995 Coils Coil 615 649 - -
Sebi554g00033 995 MobiDBLite consensus disorder prediction 876 896 - -
Sebi554g00033 995 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 441 532 IPR000717 -
Sebi554g00033 995 Coils Coil 851 892 - -
Sebi554g00033 995 Coils Coil 798 821 - -
Sebi554g00033 995 Coils Coil 669 699 - -
Sebi554g00033 995 Coils Coil 732 752 - -
Sebi554g00033 995 MobiDBLite consensus disorder prediction 876 995 - -
Sebi554g00033 995 Hamap Eukaryotic translation initiation factor 3 subunit A [EIF3A]. 1 968 IPR027512 GO:0005852
Sebi554g00033 995 Gene3D - 352 509 - -
Sebi554g00033 995 Gene3D - 268 342 - -
Sebi554g00033 995 Gene3D UVR domain 217 267 - -
Sebi554g00033 995 FunFam Eukaryotic translation initiation factor 3 subunit A 217 268 - -
Sebi554g00033 995 ProSiteProfiles PCI domain profile. 316 513 IPR000717 -
Sebi554g00033 995 FunFam Eukaryotic translation initiation factor 3 subunit A 268 342 - -
Sebi554g00033 995 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT 1 986 IPR027512 GO:0005852
Sebi554g00033 995 Coils Coil 561 602 - -
Sebi554g00033 995 Coils Coil 93 120 - -
Sebi554g00033 995 FunFam Eukaryotic translation initiation factor 3 subunit A 352 494 - -
Sebi554g00033 995 Pfam PCI domain 373 508 IPR000717 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi554g00033 1 993 Eukaryotic Initiation Factors Gene Family AT4G11420 68.989 0.0 1300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi554g00033 K03254 - gmx:100803796 1503.8