LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi554g00026	ATGGCGGCGTCACGGCGGCTCCGGGATCTTCAATCGGAAGCGTCGAACAAGATCTGCGTGGACTGTTCCCAGAAGAATCCTCAATGGGCCTCCGTCTCCTACGGTGTCTTTATGTGTCTAGAATGTTCCGGCAAGCACCGAGGCCTCGGCGTTCACATCTCCTTCGTCCGATCCGTAACCATGGACTCCTGGTCCGAACTTCAGATCAAGAAAATGGAAGCCGGAGGCAACCAGAAACTCAATGCCTTCCTCGCTCAATACGGTATCCCTAAGGAAACTGACATCGTCACCAAGTACAACTCCAACGCTGCGTCAATCTACCGTGACCGTATTCAGGCCCTCGCCGAAGGCCGTCCCTGGCGTGATCCTCCTGTTGTTAAGGAGAACGTCCGCTCCTCTGCGGGGAAGCCGCCATTGGCTAACACTGGAGGCGGAGCGATATCCGGCGAAATCAGTCTACCGGCGATGTTAGGGGATTCGGCGGAGGCGGAAACGCGCCGGCGAGGGTCGAAGTCGACGGAGGATATCTACACGCGGGCGCAATTGGAGGCTTCCGCTGCCAACAAGGAGAGCTTCTTCGCGCAGAAGATAGCGGAGAATGAATCGCGACCGGAGGGGCTTCCGCCGTCGCAGGGTGGGAAGTACGTTGGATTCGGATCTAGCCCCGCTCCTGCAAACAGGAATATTCCCCAAAACGATTATTTCTCTGTCGTTTCTCAGGGATTTGGTAAATTATCCTTGGCTGCTGCCTCTGCTGCTCAGTCTGCGGCTAATGTTGTTCAGGCAGGAACGAAAGAGTTCTCTGCTAAGGTAAAGGATGGGGGTTATGATCACAAGGTCAATGAAACTGTCACTATTGTCTCTCAGAAGACATCAGAGATTGGGCAAAGGACATGGGGTATCATGAAAGGGGTCATGGCATTGGCTTCACAGAAGGTTGAGGAGTACACTAGAGATAACCCAAATGGGAATTCTGATAACTGGCAACGAAATGAAAATAATAGACATGGTTTTTACCAAGAGTACAATCAAGAGAATAAAGGCTGGAATTCTTCTACCAGAGAAGGACAACCTTCATCAGGTGGACAAACTAATACTTATAACTCAAGTTCTTGGGATGATTGGGACCACAAAGATTCCAGAAAGGAAGAACCAGCTAGAGGATCAGCTCCTCAGTCATCAAATGGGCAGTTTGATAGTTACAACTCAAGCTCTTGGGATGATTGGGACCACAAAGATACAAGAAAGGAAGAACCAGCTAAACGATCAGCTCCCTGTAACGATGATGGTTGGGCTGGCTGGGATGATGGCAAAGATGATGGATTTGATAATAAAGCTTCTGGTCATAACGGAACGTCAGGTTCTGCCTGGACAGGAGGAGGCTTTCTCTAA	1392	0.5057	MAASRRLRDLQSEASNKICVDCSQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSELQIKKMEAGGNQKLNAFLAQYGIPKETDIVTKYNSNAASIYRDRIQALAEGRPWRDPPVVKENVRSSAGKPPLANTGGGAISGEISLPAMLGDSAEAETRRRGSKSTEDIYTRAQLEASAANKESFFAQKIAENESRPEGLPPSQGGKYVGFGSSPAPANRNIPQNDYFSVVSQGFGKLSLAAASAAQSAANVVQAGTKEFSAKVKDGGYDHKVNETVTIVSQKTSEIGQRTWGIMKGVMALASQKVEEYTRDNPNGNSDNWQRNENNRHGFYQEYNQENKGWNSSTREGQPSSGGQTNTYNSSSWDDWDHKDSRKEEPARGSAPQSSNGQFDSYNSSSWDDWDHKDTRKEEPAKRSAPCNDDGWAGWDDGKDDGFDNKASGHNGTSGSAWTGGGFL	463

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi554g00026	463	MobiDBLite	consensus disorder prediction	199	223	-	-
	Sebi554g00026	463	Gene3D	Arf GTPase activating protein	1	131	IPR038508	-
	Sebi554g00026	463	MobiDBLite	consensus disorder prediction	372	386	-	-
	Sebi554g00026	463	Pfam	Putative GTPase activating protein for Arf	5	100	IPR001164	GO:0005096
	Sebi554g00026	463	PANTHER	ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED	1	394	IPR044519	GO:0005096\|GO:0016192
	Sebi554g00026	463	SMART	arf_gap_3	1	120	IPR001164	GO:0005096
	Sebi554g00026	463	MobiDBLite	consensus disorder prediction	347	463	-	-
	Sebi554g00026	463	PRINTS	HIV Rev interacting protein signature	35	52	IPR001164	GO:0005096
	Sebi554g00026	463	PRINTS	HIV Rev interacting protein signature	16	35	IPR001164	GO:0005096
	Sebi554g00026	463	PRINTS	HIV Rev interacting protein signature	56	77	IPR001164	GO:0005096
	Sebi554g00026	463	MobiDBLite	consensus disorder prediction	405	424	-	-
	Sebi554g00026	463	FunFam	ADP-ribosylation factor GTPase-activating protein	1	129	-	-
	Sebi554g00026	463	ProSiteProfiles	ARF GTPase-activating proteins domain profile.	4	120	IPR001164	GO:0005096
	Sebi554g00026	463	CDD	ArfGap_ArfGap1	3	117	-	-
	Sebi554g00026	463	MobiDBLite	consensus disorder prediction	387	404	-	-
	Sebi554g00026	463	MobiDBLite	consensus disorder prediction	122	145	-	-
	Sebi554g00026	463	MobiDBLite	consensus disorder prediction	347	371	-	-
	Sebi554g00026	463	SUPERFAMILY	ArfGap/RecO-like zinc finger	5	116	IPR037278	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi554g00026	Sebi-Chr554	413726	418073	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi554g00026	5	138	C2H2 Transcription Factor Family	AT4G21160	39.706	5.70e-23	97.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi554g00026	K12492		-	gmx:100778302	680.248