Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi553g00021 ATGTGTAATTATCGCTGCACACGCCTTAAATATGCGCACGAGCCACCAGCACTACTCCTCCGCTTCTTGCTAGTGTGCACCCTTGTCGCCTTGCGTGCGCCGGTTGCGCAACCCCCTAACCTGCGCATCCCTACCCACCCAAGCGAAACCAACACCACCACTATCCTCCACCATACTCACAGAGCCCAGATCTCAAGCTCCAATCGCCAAGGCATGTCGAAGGCGCGTGTCTACACCGATGTCAACGTTCTTCGCCCCAAAGAGTACTGGGACTACGAGGCTCTCACCGTTCAATGGGGTGATCAAGATGATTATGAGGTTGTGCGCAAAGTGGGAAGGGGAAAGTATAGTGAGGTTTTTGAAGGCATAAATGTCAATAGCAATGAGCGCTGTATAATCAAGATTCTCAAGCCTGTCAAGAAAAAGAAGATTAAAAGAGAGATAAAAATACTTCAGAACCTTTGTGGGGGCCCAAATATTGTCAAGCTTCTTGATATTGTCAGAGATCAACATTCTAAAACTCCAAGCTTAATATTTGAGTATGTCAACAGTACAGATTTTAAAGTTTTGTATCCAACCTTGACTGATTATGACATACGCTATTACATATATGAGCTTCTTAAGGCCTTAGATTACTGCCATTCTCAAGGCATAATGCATAGAGATGTCAAGCCCCATAATGTTATGATAGATCATGAATTACGGAAACTTCGCTTGATAGATTGGGGTCTTGCTGAATTTTACCATCCTGGAAAGGAGTATAATGTTCGTGTGGCTTCAAGATACTTCAAGGGCCCTGAACTTCTAGTTGATTTGCAAGACTATGACTACTCATTAGACATGTGGAGCCTGGGCTGCATGTTTGCTGGAATGATATTTCGCAAGGAACCTTTCTTTTATGGTCACGACAACCACGATCAGCTTGTAAAAATAGCTAAGGTGCTTGGGACTGATGAACTGAATGCGTATCTGAATAAGTATCACCTGGAGCTTGATCCACAACTTGATGCACTAGTTGGAAGGCACAGTCGCAAGCCTTGGTCTAAATTTATCAATCCAGATAATCAGCATCTTGTGTCTCCAGAGGCAATTGACTTTCTTGATAAGCTCCTGCGATATGACCACCAGGACAGGCTAACGGCAAGAGAAGCAATGGCGCATCCATATTTCTCTCAGGTAAGGGCAGCAGAAAGTAGCAGAATGAGGACACAGTAA 1215 0.4436 MCNYRCTRLKYAHEPPALLLRFLLVCTLVALRAPVAQPPNLRIPTHPSETNTTTILHHTHRAQISSSNRQGMSKARVYTDVNVLRPKEYWDYEALTVQWGDQDDYEVVRKVGRGKYSEVFEGINVNSNERCIIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDELNAYLNKYHLELDPQLDALVGRHSRKPWSKFINPDNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFSQVRAAESSRMRTQ 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi553g00021 404 Gene3D Transferase(Phosphotransferase) domain 1 182 390 - -
Sebi553g00021 404 ProSitePatterns Protein kinases ATP-binding region signature. 111 134 IPR017441 GO:0005524
Sebi553g00021 404 PANTHER CASEIN KINASE II SUBUNIT ALPHA 63 400 IPR045216 GO:0004674|GO:0006468
Sebi553g00021 404 Gene3D Phosphorylase Kinase; domain 1 105 181 - -
Sebi553g00021 404 SUPERFAMILY Protein kinase-like (PK-like) 76 394 IPR011009 -
Sebi553g00021 404 CDD STKc_CK2_alpha 86 390 IPR045216 GO:0004674|GO:0006468
Sebi553g00021 404 Pfam Protein kinase domain 105 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi553g00021 404 FunFam Casein kinase II subunit alpha 182 393 - -
Sebi553g00021 404 SMART serkin_6 105 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi553g00021 404 FunFam Casein kinase II subunit alpha 91 181 - -
Sebi553g00021 404 ProSiteProfiles Protein kinase domain profile. 105 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi553g00021 404 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi553g00021 Sebi-Chr553 374759 380947 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi553g00021 103 390 Core Cell Cycle Gene Families AT1G76540 29.450 3.90e-42 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Sebi553g00021 Pkinase 1.3e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi553g00021 K03097 - gmx:100819679 741.88