Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi552g00028 ATGGACGTCACCGAGGAAGTTAGGGCAGCACACAAGCGAGAATTCGCCGATTTCTTAGATCAAGATGTGGGAAAGGGCATATACATGGACGAGATCAAAGCTCTCATCAACCATAAGCGCCGCCGCCTCATCGTCAACATCTCCGATCTCCACAACTTCCGCGACTTGGGTAACAGGATTCTGAGGAATCCAAGTGAGTACTTACAATCGTTCTGCGATGCGGTTACTGATGCGGTTCGTGCTATTGATCCCAAGTATTTGAAGGAAGGGGAACTAGTGCTTGTGGGATTTGAAGGCCCTTTTGTTTCTCGTCGAGTCACGCCCAGGGAACTTCTATCTGAATTCATAGGTTCTCTTGTAAGGCCAAAGGTTGTTAAAAGTGTTCATTTCTGCCCCACCACGGGAGACTTCACTACTCGTGAATATCGAGATATTACATCTAATATGGGTTTGCCCACAGGGTCCGTTTATCCTACAAGGGATGAAAGTGGTAACTTACTTGTGACTGAGTATGGATTGTGCAAATATAAAGATCATCAAACCTTGTCCATGCAAGAAGTTCCTGAAAATTCTGCCCCTGGTCAGCTCCCAAGAACAGTGGATATCATAGTAGAGGATGATCTCGTTGATTCTTGCAAGCCTGGAGATCGTGTGGCTATTGTGGGGACATATAAGGCTCTTCCAGGGAAAAGCAAAGGCAGTGTGAATGGAGTATTCAGGACTGTGCTCATAGCCAACAATGTTTCTCTTCTCAACAAAGAGGCTAATGCACCAATCTACAGTCCTGAAGACCTCAAAAACATAAAAAAAATAGCTGAAAGAGATGATACATTTGACCTGCTTGGTAATTCACTTGCACCTTCTATATATGGGCATTCTTGGATAAAGAAAGCAGTGGTTTTGTTGATGCTTAGCGGAGTGGAGAAGAACTTAAAGAATGGAACTCACTTGCGAGGCGACATTAACATGATGATGGTTGGTGATCCCTCTGTTGCCAAGTCTCAACTCTTAAGAGCTATTATGAATATTGCTCCCTTGGCCATATCAACAACAGGTCGGGGTTCTTCTGGGGTTGGTTTGACAGCAGCAGTTACTTCAGATCAAGAAACAGGGGAAAGAAGACTAGAAGCTGGGGCAATGGTTCTTGCTGACAGAGGCGTTGTCTGCATTGATGAATTTGACAAAATGAATGACCAAGATCGTGTGGCTATACATGAAGTAATGGAACAGCAAACCGTAACTATTGCTAAAGCTGGTATCCATGCATCACTTAATGCTCGATGCAGTGTGGTGGCTGCTGCAAATCCCATATATGGAACTTATGATCGATCACTGACTCCGACCAAAAATATTGGACTCCCAGACTCTTTGCTTTCTCGATTTGATCTACTGTTCATTGTGTTGGATCAAATGGATCCTGATATTGATCGTCAAATATCAGAGCATGTTCTGCGTATGCATCGATTTCGTTCTGCCATTGATGGAGGTGAGGCGGCACTTGATGGGAGCTCAAGATATGGAAGAGAAGATGAAGCTGATACGGATTCATCTGTCTTTGTCAAATACAACAGAATGCTACATGGGAAGAAAACTGAAAGAGGACGCAAACGTGATACGCTTACAATTAAGTTTCTTAAAAAGTATATCCATTATGCCAAGCATAGGATTCAACCTGAACTGACTGATGAGGCATCTGATCAAATTGCCACAGCATATGCTGAGCTCAGAAATGCAAGTTCAAATGCAAAGACTGGAGGAACGCTCCCTATAACTGCCAGAACTTTAGAAACCATAATACGTCTCTCAACTGCTCATGCCAAATTGAAGTTGAGCAGAAAGGTTTCAAAGTCTGATGTTGACGCTGCTTTGAAGGTTCTTAATTTTGCAATATATCACAAAGAACTGACAGAAATGGAGGAGCGTGAGCATGAGAGGGAGAGAGAACTGGAGAGGAAGCGTAGGGCTGATGGTGAAAATGATGATCCGGATCGTGCTCCAAGAAAGAGAAGAGGGTCAACACCAGATGCTATGGAAGTAGATGATACATCAGCACCCCAATCTGCTGCCAGTCTCACTCCTGAAAGAATCGAAGCATTTAATTCTCTATTTGGTCAGCATATGCGTGCCAACCGCTTGGATCTCATATCTATTGCAGACATAGAGGGTGTTATCAACAGGGCAGATTCCACTTACAGCTCGGCAGATATATTACTGCTATTAGAGGTACGATCTTCTGAGGTGTTTCCTAATCCTCCCTGTATTTACTAG 2268 0.4369 MDVTEEVRAAHKREFADFLDQDVGKGIYMDEIKALINHKRRRLIVNISDLHNFRDLGNRILRNPSEYLQSFCDAVTDAVRAIDPKYLKEGELVLVGFEGPFVSRRVTPRELLSEFIGSLVRPKVVKSVHFCPTTGDFTTREYRDITSNMGLPTGSVYPTRDESGNLLVTEYGLCKYKDHQTLSMQEVPENSAPGQLPRTVDIIVEDDLVDSCKPGDRVAIVGTYKALPGKSKGSVNGVFRTVLIANNVSLLNKEANAPIYSPEDLKNIKKIAERDDTFDLLGNSLAPSIYGHSWIKKAVVLLMLSGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRQISEHVLRMHRFRSAIDGGEAALDGSSRYGREDEADTDSSVFVKYNRMLHGKKTERGRKRDTLTIKFLKKYIHYAKHRIQPELTDEASDQIATAYAELRNASSNAKTGGTLPITARTLETIIRLSTAHAKLKLSRKVSKSDVDAALKVLNFAIYHKELTEMEEREHERERELERKRRADGENDDPDRAPRKRRGSTPDAMEVDDTSAPQSAASLTPERIEAFNSLFGQHMRANRLDLISIADIEGVINRADSTYSSADILLLLEVRSSEVFPNPPCIY 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi552g00028 755 MobiDBLite consensus disorder prediction 637 676 - -
Sebi552g00028 755 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 287 641 IPR027417 -
Sebi552g00028 755 Pfam MCM OB domain 118 227 IPR033762 -
Sebi552g00028 755 Gene3D - 259 652 IPR027417 -
Sebi552g00028 755 ProSitePatterns MCM family signature. 386 394 IPR018525 GO:0003677|GO:0005524|GO:0006260
Sebi552g00028 755 FunFam DNA helicase 5 104 - -
Sebi552g00028 755 MobiDBLite consensus disorder prediction 637 691 - -
Sebi552g00028 755 Pfam MCM P-loop domain 265 487 IPR001208 GO:0003677|GO:0005524|GO:0032508
Sebi552g00028 755 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 195 207 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Sebi552g00028 755 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 618 633 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Sebi552g00028 755 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 479 489 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Sebi552g00028 755 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 169 183 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Sebi552g00028 755 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 446 456 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Sebi552g00028 755 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 7 654 IPR031327 GO:0003677|GO:0005524|GO:0032508
Sebi552g00028 755 FunFam DNA helicase 123 177 - -
Sebi552g00028 755 SMART mcm 104 631 IPR031327 GO:0003677|GO:0005524|GO:0032508
Sebi552g00028 755 PRINTS Mini-chromosome maintenance (MCM) protein family signature 430 442 IPR001208 GO:0003677|GO:0005524|GO:0032508
Sebi552g00028 755 PRINTS Mini-chromosome maintenance (MCM) protein family signature 378 392 IPR001208 GO:0003677|GO:0005524|GO:0032508
Sebi552g00028 755 PRINTS Mini-chromosome maintenance (MCM) protein family signature 457 465 IPR001208 GO:0003677|GO:0005524|GO:0032508
Sebi552g00028 755 PRINTS Mini-chromosome maintenance (MCM) protein family signature 406 419 IPR001208 GO:0003677|GO:0005524|GO:0032508
Sebi552g00028 755 PRINTS Mini-chromosome maintenance (MCM) protein family signature 318 333 IPR001208 GO:0003677|GO:0005524|GO:0032508
Sebi552g00028 755 ProSiteProfiles MCM family domain profile. 277 483 IPR001208 GO:0003677|GO:0005524|GO:0032508
Sebi552g00028 755 Gene3D - 166 255 IPR012340 -
Sebi552g00028 755 SUPERFAMILY Nucleic acid-binding proteins 13 247 IPR012340 -
Sebi552g00028 755 Coils Coil 632 655 - -
Sebi552g00028 755 Gene3D - 3 99 - -
Sebi552g00028 755 Pfam MCM N-terminal domain 12 84 IPR027925 -
Sebi552g00028 755 CDD MCM3 280 629 - -
Sebi552g00028 755 SMART AAA_5 319 472 IPR003593 GO:0016887
Sebi552g00028 755 Pfam MCM AAA-lid domain 544 627 IPR041562 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi552g00028 Sebi-Chr552 635013 639750 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi552g00028 1 563 Core DNA Replication Machinery Family AT5G46280 80.589 0.0 946
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi552g00028 K02541 - gmx:100811545 1277.31