Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi552g00018 ATGGCCGATGAACCAATGCCTACTCGCTGGTCTTTCCAGGACTTTAAATTGCATTATGATGTTAAGTTTGGTAGGAAGAAAGTCGTGGAGAATGGTGAGACTGCTGATAAAGCGCTCAGCAATGGAAGTTTGTTGGGAAATGCATCCAATGGCAATCTGCATTCGAAAAGAACATCGGATAGGGCTATTTACGAGCAGTTTCAAAGCCAGGGGCAGAATCCGACGCACGCAAATGGTTTTTCACCAAACGATATGGATGAAAAGCCGCAGAAGCCTTTGCTTCCACCTTTTGAATCTGCAGAAATGCGTACTTTAGCGGAGAGCTTAAGTAGGGATATCGTTCGGGGGAGTCCAGATGTGAAGTGGGAAACCATCAAGGGGTTAGAGAATGCCAAATGTTTACTTAAAGAGGCTGTTGTGATGCCAATTAAGTATCCCAAGTACTTTACTGGTCTGTTATCACCATGGAAGGGCATTCTCCTTTTTGGCCCCCCTGGGACAGGAAAGACAATGCTTGCAAAGGCTGTTGCAACGGAGTGCAAGACTACATTTTTTAATATTTCAGCATCTTCTGTTGTCAGCAAATGGCGAGGTGATTCGGAGAAGTTAGTGAAGGTATTGTTTGAGCTTGCAAGGCATCATGCACCCTCAACAATATTTCTTGATGAAATTGATGCAATCATTAGCCAACGTGGTGAAGCTCGCAGTGAACATGAAGCAAGTAGACGGTTAAAAACCGAGCTACTGGTTCAGATGGATGGTTTGGCACGGACAGATGAGCTTGTTTTTGTTTTGGCGGCAACAAACCTTCCCTGGGAATTGGATGCGGCCATGCTCCGACGTCTTGAGAAGCGAATCCTTGTACCACTTCCAGAACCAGAAGCGAGAATAGCAATGTTTGAGGAACTCCTTCCTCCACAGCCTGATGGGGCACCGATCCCCTATGATTTACTGGTGGACCAGACAGAAGGATATTCTGGCTCAGATATCCGATTACTTTGTAAAGAGATAGCAATGCAGCCTTTGAGACGCTTGATGTCACAACTTGAACAGAGACAAGAGGTGGTGCCTGAAGAAGAGTTACCAAAAGTTGGGCCGGTCAGACCTGGAGATATAGAGACAGCCTTAAAAAACACGAGGCCATCTGCTCATCTCCATGCCCACAAATATGACAGGTTTAATGCAGATTATGGTAGTCAAATACTTAAATGA 1212 0.453 MADEPMPTRWSFQDFKLHYDVKFGRKKVVENGETADKALSNGSLLGNASNGNLHSKRTSDRAIYEQFQSQGQNPTHANGFSPNDMDEKPQKPLLPPFESAEMRTLAESLSRDIVRGSPDVKWETIKGLENAKCLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLVKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLVQMDGLARTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPEARIAMFEELLPPQPDGAPIPYDLLVDQTEGYSGSDIRLLCKEIAMQPLRRLMSQLEQRQEVVPEEELPKVGPVRPGDIETALKNTRPSAHLHAHKYDRFNADYGSQILK 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi552g00018 403 FunFam Katanin p60 ATPase-containing subunit A-like 2 118 302 - -
Sebi552g00018 403 Pfam ATPase family associated with various cellular activities (AAA) 159 289 IPR003959 GO:0005524|GO:0016887
Sebi552g00018 403 Pfam AAA+ lid domain 317 352 IPR041569 -
Sebi552g00018 403 CDD RecA-like_VPS4-like 125 288 - -
Sebi552g00018 403 SMART AAA_5 155 292 IPR003593 GO:0016887
Sebi552g00018 403 FunFam Katanin p60 ATPase-containing subunit A-like 2 291 379 - -
Sebi552g00018 403 PANTHER AAA DOMAIN-CONTAINING 62 399 - -
Sebi552g00018 403 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 118 384 IPR027417 -
Sebi552g00018 403 MobiDBLite consensus disorder prediction 38 80 - -
Sebi552g00018 403 Gene3D - 118 393 IPR027417 -
Sebi552g00018 403 MobiDBLite consensus disorder prediction 38 95 - -
Sebi552g00018 403 Gene3D - 291 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi552g00018 Sebi-Chr552 437837 446979 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi552g00018 153 362 Calmodulin-binding Proteins AT3G56690 36.150 7.47e-31 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi552g00018 K07767 - gmx:100794098 681.404