Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi551g00032 ATGAGCTTCTTGAGGCCTTCTGCATTGTACCAGTTTCTGATCAGTTATCCTTCCCTGCGATGGATGCCGTGTCAGAGTTGGGGGTTCCTTCGATGGCCCGGTCTTGACGGGTTCTTGAGGCTTTTGGTGATTGTGCTTCTCTGGTCTACCTTCTCCGAGCTTCGCTACATACCCTCTTCTTCTATGTACCCTACCCTCCGTGTTGGCGATCGAATTATTGTCGAAAAGGCTTCATATTATGTCAGGAGTCCTGCTATACATGATATTGTAACATTTCGGGATCCAACACAGCTTTCTGGAGACAACACAGATGTTGTTTTTATTAAGAGAGTTGTTGCAAAAGCAGGAGACACTGTTGAGATTCATCAAGGGGGTCTCTATGTCAATGGCATTGCTCAGAAGGAAGATTTTGTGATACAGCCTCCAACATACACATTGAATTTAACTTATGTGCCCGAAGGCCATGTTTATGTGTTGGGGGATAATCGTAACAATAGCTATGATTCCCATGTATGGCCATGTGATTTCCATGAAGAGTTCCCTCCTGCTGCTCCACAAATGAAGCATATCATCTGCTAA 579 0.4473 MSFLRPSALYQFLISYPSLRWMPCQSWGFLRWPGLDGFLRLLVIVLLWSTFSELRYIPSSSMYPTLRVGDRIIVEKASYYVRSPAIHDIVTFRDPTQLSGDNTDVVFIKRVVAKAGDTVEIHQGGLYVNGIAQKEDFVIQPPTYTLNLTYVPEGHVYVLGDNRNNSYDSHVWPCDFHEEFPPAAPQMKHIIC 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi551g00032 192 Pfam Signal peptidase, peptidase S26 39 172 IPR019533 GO:0004252|GO:0006465
Sebi551g00032 192 Gene3D Umud Fragment, subunit A 59 184 - -
Sebi551g00032 192 PANTHER SIGNAL PEPTIDASE I 37 172 IPR000223 GO:0006508|GO:0008236|GO:0016020
Sebi551g00032 192 SUPERFAMILY LexA/Signal peptidase 51 172 IPR036286 -
Sebi551g00032 192 ProSitePatterns Signal peptidases I serine active site. 59 66 IPR019756 GO:0004252|GO:0016020
Sebi551g00032 192 PRINTS Bacterial leader peptidase 1 (S26A) family signature 107 119 IPR000223 GO:0006508|GO:0008236|GO:0016020
Sebi551g00032 192 PRINTS Bacterial leader peptidase 1 (S26A) family signature 50 66 IPR000223 GO:0006508|GO:0008236|GO:0016020
Sebi551g00032 192 PRINTS Bacterial leader peptidase 1 (S26A) family signature 151 170 IPR000223 GO:0006508|GO:0008236|GO:0016020
Sebi551g00032 192 ProSitePatterns Signal peptidases I signature 3. 156 169 IPR019758 GO:0004252|GO:0016020
Sebi551g00032 192 FunFam Peptidase/ serine-type peptidase 59 176 - -
Sebi551g00032 192 CDD S26_SPase_I 53 172 IPR019533 GO:0004252|GO:0006465
Sebi551g00032 192 NCBIfam signal peptidase I 40 172 IPR000223 GO:0006508|GO:0008236|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi551g00032 Sebi-Chr551 551737 555472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi551g00032 62 170 MADS-box Gene Family AT1G29960 30.909 4.97e-06 42.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi551g00032 K03100 - gmx:100306121 315.464