Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi551g00019 ATGGCGAAGTTGTTAGCCGTAGCCTGTCTTCCAAATGGAGGATGGCGCGCACTCTCGCCGCAACCTCACTACCCGTCCATGCCTAGGTACCCCAAGGGCGCTGCCACCGTCCAGGAGGGTTCAGAGACCAGTGCCCTTTTCTCCGTCCTCGGAATGAGTTGCTCCGCCTGCGCTGGATCCGTCGAGAAGGCCATCAAACGCCTCCCCGGGATTCTTGAAGCCTTCGTCGATGTCCTCAACAACCGTGTACGCGTCCTCTTTTATCCCTCCTTCGTTAACGAGGAGGAGATTCGTGAGGCCATTGAAGATGCTGGATTTGAGGCCGCGTTACTCACGAACGCGATGAACGACAAGTCTCTTCAAGTGTGCCGCATACAAATCAACGGGATGACTTGCACGTCGTGTTCCTCCACTGTTGAATCTGCTCTGGTAGCCATCCATGGTGTGGTGAAAGCTCGAGTGGCTTTAGCAACTGAAGAAGCTGAAGTTCACTACAATCCAAATTTCGTTACCTACAACCAAATTTTGGAAGGCGTAGAAGATACTGGATTCGAAGCCACGCTTATCAGTTCCAGTGAAGATTTGAGTAAGATAGACCTCCTGGTTGAAGGTGATTTCTCTAATCATTCCATGGAACTGATTGTAGAATCTCTTCGAGCACTCCCAGGGGTCTTAGATGTAGATATACATGTGGAATTGAATAAAATAACACTAACTTATAAACCAGACATGACAGGGCCTAGGAACTTCATCAGTGTGATTGAGGAAACTAGTTTTGGGAATTTCAAGGCAAAAATATTTCCTCAAGAAGGAGGAAGAAGGGATACTCATAGAAGGGAGGAAATTAAGCAATATTATAGATCTTTCTTGTGGAGTTTGGTGTTTACTATTCCTGTCTTTCTAACCTCCATGGTGCTTATGCATGTCCCTGGAGTAAAGGATTCGTTAGATGCTAAAGTCGTCAATATGCTTACAGTGGGGGAAATTGCAAGATGGGTACTTGCTACTCCAGTGCAGTTCAGTTTGGGGTGGCGATTTTACTCTGGTTCTTACAAATCATTACGCCATGGCTCTGCTAACATGGATGTTCTGATTGCCTTGGGAACAAATGCAGCGTACTTCTATTCAGTATACTCTGTTCTGAGAGCTGCTACCTCTCCACATTTTAAGGGTAGTGATTTCTTTGAGACTAGTGCGATGCTTATTTCATTCATTCTGCTTGGGAAATATCTTGAGATTTTAGCCAAGGGGAAGACATCCAATGCAATTGCCAAGCTCATGAACTTGACCCCGGACACTGCTATGTTGTTAACTCTGGACAGTGAAGGGAATGTTATCAGGGAGCAAGAAATTGATAGCCGATTGGTTCAAAAGAATGATGTGATTAAAATTATTCCTGGTGCAAAAGTGGCTTCAGATGGATTGGTTATATGGGGCCAGAGTCATGTGAATGAGAGCATGATCACAGGTGAGGCACGTCCTGTGGCGAAGAGGAAAGGAAACACTGTTATTGGAGGAACTGTAAATGAGAATGGAGTGTTGCATGTTAAGGCAACACGGGTCGGATCAGAAAGTGCTCTTTCCCAAATTGTTCGACTCGTTGAGTCAGCACAAATGGCCAAGGCGCCAGTGCAGAAGTTTGCTGATCGGATTTCAAAATACTTTGTGCCTTTGGTGATCTTAATCTCATTGACAACTTGGCTTTCTTGGTTCTTAGCCGGAAAATTTCATGCTTACCCAAAGTCTTGGATACCATCTTCCATGGACAGCTTTGAGCTTGCTTTACAGTTTGGAATATCTGTCATGGTCATAGCCTGCCCTTGTGCTTTGGGTTTAGCAACACCAACTGCTGTTATGGTTGGCACTGGAGTTGGTGCATCTCAGGGTGTACTGATCAAAGGAGGGCAAGCATTAGAAAGTGCACATAAGGTGAACTGCATTGTTTTTGACAAGACGGGTACTCTCACTGTTGGGAAACCTGTGATAGTAAATACAAAACTATTGATAAACATGGTACTCCGGGAATTCTATGAACTTGTGGCTGCTGCTGAGGTGAATAGTGAGCATCCACTGGCTAAGGCCATTGTTGAGTATGCCAAAAGATTCAGAGATGAAGGGAACCTTTCTTGGCCAGAAGCACGTGATTTTGTTTCCGTTACTGGACACGGAGTAAAGGCCATCGTTCCTAACAAGGAAATAATTGTGGGTAATAAGAGCTTGTTGGCTGACCATAACATTGAGATTCCTAGTATTGCTAAAGATATACTTGCTGAAGCCGAAAATATGGCTCAGACAGGGATTTTAGTATCTATAAATGGGGAAGTAGCTGCTGTTTTGGCAGTATCTGATCCACTGAAACCAGGTGCGCAAGAAGTCATCTCCATTCTCAAGTCTATGAAAATTAGGAGCATCATGGTTACTGGGGACAACCTGGGAACTGCTAATTCTATTGCGAGGGAAGTTGGAATTGAAGATGTTATAGCCGAGGCCAAACCCGAGCAGAAAGCAGAGAAAGTGAAAGAGTTACAGGCTACTGGGTACACTGTGGCTATGGTGGGGGATGGTATCAATGATTCACCTGCACTTGTGGCAGCCGATGTGGGAATGGCAATAGGTGCTGGTACAGACATTGCTATTGAAGCAGCTGATATTGTCCTCATGAAGAGCAACTTAGAGGATGTCATAACTGCTATTGACCTTTCCAGAAAAACATTTTCCCGTATACGCCTGAATTACTTTTGGGCTTTGGGTTATAATATGCTTGGCATCCCAATTGCTGCTGGAGTTCTTTTCCCTTCTACAGGGTTTCGATTGCCACCCTGGATTGCTGGGGCTGCTATGGCTGCCTCTTCTGTCAGCGTTGTTTGCTGCTCTCTGTTGTTGAAATATTACAGGAGACCCAAGAAGCTGGAGAACCTCGACATACGGGGTATAAGGATCGAATAA 2946 0.4521 MAKLLAVACLPNGGWRALSPQPHYPSMPRYPKGAATVQEGSETSALFSVLGMSCSACAGSVEKAIKRLPGILEAFVDVLNNRVRVLFYPSFVNEEEIREAIEDAGFEAALLTNAMNDKSLQVCRIQINGMTCTSCSSTVESALVAIHGVVKARVALATEEAEVHYNPNFVTYNQILEGVEDTGFEATLISSSEDLSKIDLLVEGDFSNHSMELIVESLRALPGVLDVDIHVELNKITLTYKPDMTGPRNFISVIEETSFGNFKAKIFPQEGGRRDTHRREEIKQYYRSFLWSLVFTIPVFLTSMVLMHVPGVKDSLDAKVVNMLTVGEIARWVLATPVQFSLGWRFYSGSYKSLRHGSANMDVLIALGTNAAYFYSVYSVLRAATSPHFKGSDFFETSAMLISFILLGKYLEILAKGKTSNAIAKLMNLTPDTAMLLTLDSEGNVIREQEIDSRLVQKNDVIKIIPGAKVASDGLVIWGQSHVNESMITGEARPVAKRKGNTVIGGTVNENGVLHVKATRVGSESALSQIVRLVESAQMAKAPVQKFADRISKYFVPLVILISLTTWLSWFLAGKFHAYPKSWIPSSMDSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVIVNTKLLINMVLREFYELVAAAEVNSEHPLAKAIVEYAKRFRDEGNLSWPEARDFVSVTGHGVKAIVPNKEIIVGNKSLLADHNIEIPSIAKDILAEAENMAQTGILVSINGEVAAVLAVSDPLKPGAQEVISILKSMKIRSIMVTGDNLGTANSIAREVGIEDVIAEAKPEQKAEKVKELQATGYTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYFWALGYNMLGIPIAAGVLFPSTGFRLPPWIAGAAMAASSVSVVCCSLLLKYYRRPKKLENLDIRGIRIE 981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi551g00019 981 ProSitePatterns E1-E2 ATPases phosphorylation site. 650 656 IPR018303 -
Sebi551g00019 981 ProSitePatterns Heavy-metal-associated domain. 49 78 IPR017969 GO:0046872
Sebi551g00019 981 ProSitePatterns Heavy-metal-associated domain. 127 156 IPR017969 GO:0046872
Sebi551g00019 981 SUPERFAMILY HMA, heavy metal-associated domain 118 191 IPR036163 GO:0046872
Sebi551g00019 981 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 7 977 - -
Sebi551g00019 981 SFLD C1.7: P-type atpase like 630 904 - -
Sebi551g00019 981 ProSiteProfiles Heavy-metal-associated domain profile. 196 262 IPR006121 GO:0046872
Sebi551g00019 981 Gene3D - 733 783 IPR023299 GO:0000166
Sebi551g00019 981 Gene3D - 655 732 IPR023299 GO:0000166
Sebi551g00019 981 FunFam Probable copper-transporting ATPase HMA5 762 909 - -
Sebi551g00019 981 PRINTS H+-transporting ATPase (proton pump) signature 883 908 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi551g00019 981 PRINTS H+-transporting ATPase (proton pump) signature 824 840 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi551g00019 981 PRINTS H+-transporting ATPase (proton pump) signature 852 868 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi551g00019 981 Pfam haloacid dehalogenase-like hydrolase 644 866 - -
Sebi551g00019 981 CDD HMA 47 109 IPR006121 GO:0046872
Sebi551g00019 981 Gene3D - 416 538 - -
Sebi551g00019 981 Pfam Heavy-metal-associated domain 47 107 IPR006121 GO:0046872
Sebi551g00019 981 Pfam Heavy-metal-associated domain 125 185 IPR006121 GO:0046872
Sebi551g00019 981 SUPERFAMILY Calcium ATPase, transmembrane domain M 396 919 IPR023298 -
Sebi551g00019 981 SUPERFAMILY HMA, heavy metal-associated domain 41 111 IPR036163 GO:0046872
Sebi551g00019 981 SUPERFAMILY HAD-like 647 958 IPR036412 -
Sebi551g00019 981 Gene3D - 40 111 - -
Sebi551g00019 981 NCBIfam copper ion binding protein 47 108 IPR006122 GO:0005507
Sebi551g00019 981 NCBIfam copper ion binding protein 125 186 IPR006122 GO:0005507
Sebi551g00019 981 SUPERFAMILY Calcium ATPase, transduction domain A 448 534 IPR008250 -
Sebi551g00019 981 CDD HMA 125 187 IPR006121 GO:0046872
Sebi551g00019 981 ProSiteProfiles Heavy-metal-associated domain profile. 43 109 IPR006121 GO:0046872
Sebi551g00019 981 FunFam Copper-transporting ATPase HMA5 42 113 - -
Sebi551g00019 981 ProSiteProfiles Heavy-metal-associated domain profile. 121 187 IPR006121 GO:0046872
Sebi551g00019 981 FunFam Copper-transporting ATPase HMA5 120 191 - -
Sebi551g00019 981 SFLD p-type atpase 630 904 IPR044492 -
Sebi551g00019 981 FunFam Copper-transporting ATPase 1, putative 416 538 - -
Sebi551g00019 981 NCBIfam heavy metal translocating P-type ATPase 361 961 IPR027256 GO:0006812|GO:0016020|GO:0019829
Sebi551g00019 981 NCBIfam HAD-IC family P-type ATPase 401 936 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi551g00019 981 PRINTS P-type cation-transporting ATPase superfamily signature 648 662 - -
Sebi551g00019 981 PRINTS P-type cation-transporting ATPase superfamily signature 799 809 - -
Sebi551g00019 981 PRINTS P-type cation-transporting ATPase superfamily signature 875 887 - -
Sebi551g00019 981 PRINTS P-type cation-transporting ATPase superfamily signature 484 498 - -
Sebi551g00019 981 PRINTS P-type cation-transporting ATPase superfamily signature 777 788 - -
Sebi551g00019 981 PRINTS P-type cation-transporting ATPase superfamily signature 852 871 - -
Sebi551g00019 981 Gene3D - 121 194 - -
Sebi551g00019 981 SUPERFAMILY HMA, heavy metal-associated domain 192 260 IPR036163 GO:0046872
Sebi551g00019 981 Pfam E1-E2 ATPase 443 626 - -
Sebi551g00019 981 CDD P-type_ATPase_Cu-like 287 962 - -
Sebi551g00019 981 Gene3D - 615 909 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi551g00019 Sebi-Chr551 284840 288827 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi551g00019 43 981 Primary Pumps ATPases AT1G63440 77.200 0.0 1505
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi551g00019 K17686 - gmx:100816893 1607.42