Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi551g00017 ATGGGTAGGGGTAAGATTGAGATCAAAAGGATTGAGAACTCAAGCAACAGGCAAGTTACCTACTCAAAGAGAAAGAATGGGATCCTAAAGAAGGCAAGGGAAATTAGTGTTCTTTGTGATGCTCAACTTTCCCTCATCATCTTTGGTGCCTCTGGAAAGATGCATGAATACATCAGTCCATCCACCACGTTGATTGACATTCTGGACAGATACCAGAGAGCTTCTGGGAAGACACTCTGGGATGCTAAGCATGAGAACCTCAGCAATGAAATTGATAGAGTAAAGAAAGAGAATGACAGCATGCAAATTGAGCTCAGGCACTTGAAAGGAGAGGACATTACCTCACTGAATTATAAAGAGCTGATGGCCTTAGAGGATGCCCTTGAAAATGGCCTCAAATGTGTCCAAGAGAAAAAGATGGAAGTGCACAGGATGCTCAAGAGAAATGGCAAGATTTTGGAAGAGAAAAATAAGGAACTCACTTTCCTTCTGGAGATTTCATACATGATGAACCATCAAATGAAATTGTCTCCTTTTTCCTTTCAACAGCAACAGCATTTGGCACTGGAAGGCGTGGGAAACATGCATGGACAGTGGATTTGA 603 0.4212 MGRGKIEIKRIENSSNRQVTYSKRKNGILKKAREISVLCDAQLSLIIFGASGKMHEYISPSTTLIDILDRYQRASGKTLWDAKHENLSNEIDRVKKENDSMQIELRHLKGEDITSLNYKELMALEDALENGLKCVQEKKMEVHRMLKRNGKILEEKNKELTFLLEISYMMNHQMKLSPFSFQQQQHLALEGVGNMHGQWI 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi551g00017 200 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Sebi551g00017 200 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Sebi551g00017 200 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Sebi551g00017 200 Gene3D - 13 101 IPR036879 GO:0003677|GO:0046983
Sebi551g00017 200 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Sebi551g00017 200 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Sebi551g00017 200 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Sebi551g00017 200 Pfam K-box region 81 161 IPR002487 GO:0003700|GO:0005634|GO:0006355
Sebi551g00017 200 Coils Coil 77 111 - -
Sebi551g00017 200 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 167 - -
Sebi551g00017 200 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Sebi551g00017 200 ProSiteProfiles K-box domain profile. 84 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Sebi551g00017 200 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Sebi551g00017 200 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi551g00017 Sebi-Chr551 268002 269796 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi551g00017 1 143 MADS-box Gene Family AT5G20240 67.133 6.89e-68 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Sebi551g00017 K-box 4.4e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi551g00017 K09264 - gmx:100795861 328.176