LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi551g00013	ATGCAGCATACTGTTCCGGCCGGAGAAACCACCGGAGGAAGTTCCGGTGGCCGGAAGGTGGTGGTGGGGGTGAAGCTGGACTCCCCTAGCAAAGAGCTTCTCACGTGGGCTTTGGTTAAAGTTGCTCACCCTGGTGATACTGTCGTTGCTCTGCATGTTCTCGGGAACCATGGAATTGTGAATGGAGATGGGAAATCGTCTCTGCTTGGGCTTGTCAAGGCATTTGACTCTGTTCTTGCTGTTTATGAAGGATTCTGCAATTTGAAACAGGTGTGTCTCAAGCTCAAAGTTTGCCGTGGTTCATCAGTGAAGAAAATTTTGGTTCGAGAAGCAAATACTTATTCTGCAACTCATGTTGTGGTTGGAACTGCTCAGGGCCTTCATAAAATCCGGTCATCTACCTCTGTAGCTAAGCACTGTGCTAAAAAGTTATCCAAGAACTGCTGTGTTCTTGCTGTTAACAATGGGAAAATTGTTTTCAAGCGTGACAGCTTGTCATCAAATGTAGCTGAAACACAAGGGATTGATCTTCATCATAGAAATGGTTTGTTTGGTTCAATTCATTGGACTCTCAGTAAAGGCACAAAAGTACTGAGTGATGAGGGAAGTAGCCACATTTCAGATCACAGTTTAGCTAAGGTTCTTCTGGATTCTACAGAAGAAGTTGTTAGAAAACAGAGCTGCACAATTTGTGGCACAACCCCTGAATTGCAAAACACTTCTAGTTCTAGCCACCAATCTGAAGAAGGGTCTTCTGGTGATGGTGGCAGTGAGAATTCTTTGGCTATAGTGCCTGTACAGACCACAGATGCAGGACAACCTGAATTAAAACCAGGTTGGCCACTTCTTAACCGGAGGATTTTATCAGACAGACAATCTCTTGACAGATCATTGATGTGCCACCAGACCTCTGTGGTCCAGTGGGCTATGAGGTTGCCTTGTAGAAATCTTTCATATGGTGTAGATCATGATAGAAAACCTAACATTAATGATCAAGGTCAAGGTCAACCTGTGGCTTTAGATAGTGAAAGTGGTGCTCTTGTTCCAGCAGGTACTGAAATAGGGACAGCCTCTTTGCCTGAACGCAACTCAAGAAGTATTCCTAAAGAATTGGAGGGCCTTCATGAGAAATACTCATCAACTTGTAGATTGTTTGAGTACCAAGAACTTGTATCAGCAACATCAAATTTCTTGCCTGAAAACTTGATTGGGAAAGGAGGAAGTAGTAAGGTTTATAAAGGATGCCTTCCTGATGGCAAGGAACTTGCTGTTAAGATCCTAAAGCCTTCTGATGATGTTTTGAAGGAGTTCCTTTCAGAAATAGAGATCATCACTACCTTGCATCACAAAAACATTATCTCCCTCCTTGGGTTCTGCTTTGAGAATGGCAATCTTCTTTTGGTCTATGATTTCTTATCAAGAGGAAGCCTTGAAGAGAATCTACATGGGAATAAGAAAAATCCATGTATGTTTGGTTGGACTGAGAGATATAAGGTAGCAATGGGTGTTGCTGAGGCTTTAGATTATCTGCATTGTAAAGATGATCAACCTGTGATCCATAGGGATGTAAAATCATCAAATGTATTATTATATGAGGATTTTGAGCCCCAGCTCTCTGATTTTGGACTGGCTAAGTGGGCATCAACCTCGTCATCACATATAACCTGCACAGATGTTGCAGGAACCTTTGGTTATTTGGCTCCTGAATACTTCATGTATGGAAAAGTAAATGAGAAGATTGATGTCTATGCATTTGGTGTTGTGCTCCTTGAGCTTCTTTCAGGGAGAAAGCCCATAAGTGGTGATTATCCAAAAGGTCAAGAGAGTCTTGTTATGTGGGCAAGTCCAATTCTAAATAGTGGAAAGGTGTCACAATTGTTTGATCCTAGTTTGGGTGATAACTATGATCATGAGGAGATGGAAAGGATGGTCTTAGCAGCCACTCTTTGTATCAGACGTGCTCCAAGAGCTAGGCCTCAAATGAGTCTTATTTGTAAGCTCCTTCAAGGTGATACTGATGCAATCAAGTGGGCAAGGATAGAAGTTAATGCTTTGGTAGCACCTGAAATGCTTGACGATGAAGCATGTCCACCTAGCAATATACAATCACATCTTAATTTGGCACTGCTTAATGTGGAGGATGACTCACTCTCCATGTGCAGTGTTGTGCAAAGTGTCTCATTGGAGGACTACTTGAGAGGCAGATGTAGCCGTTCATCAAGCTTTGACTGA	2232	0.4252	MQHTVPAGETTGGSSGGRKVVVGVKLDSPSKELLTWALVKVAHPGDTVVALHVLGNHGIVNGDGKSSLLGLVKAFDSVLAVYEGFCNLKQVCLKLKVCRGSSVKKILVREANTYSATHVVVGTAQGLHKIRSSTSVAKHCAKKLSKNCCVLAVNNGKIVFKRDSLSSNVAETQGIDLHHRNGLFGSIHWTLSKGTKVLSDEGSSHISDHSLAKVLLDSTEEVVRKQSCTICGTTPELQNTSSSSHQSEEGSSGDGGSENSLAIVPVQTTDAGQPELKPGWPLLNRRILSDRQSLDRSLMCHQTSVVQWAMRLPCRNLSYGVDHDRKPNINDQGQGQPVALDSESGALVPAGTEIGTASLPERNSRSIPKELEGLHEKYSSTCRLFEYQELVSATSNFLPENLIGKGGSSKVYKGCLPDGKELAVKILKPSDDVLKEFLSEIEIITTLHHKNIISLLGFCFENGNLLLVYDFLSRGSLEENLHGNKKNPCMFGWTERYKVAMGVAEALDYLHCKDDQPVIHRDVKSSNVLLYEDFEPQLSDFGLAKWASTSSSHITCTDVAGTFGYLAPEYFMYGKVNEKIDVYAFGVVLLELLSGRKPISGDYPKGQESLVMWASPILNSGKVSQLFDPSLGDNYDHEEMERMVLAATLCIRRAPRARPQMSLICKLLQGDTDAIKWARIEVNALVAPEMLDDEACPPSNIQSHLNLALLNVEDDSLSMCSVVQSVSLEDYLRGRCSRSSSFD	743

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi551g00013	743	Gene3D	Phosphorylase Kinase; domain 1	362	471	-	-
	Sebi551g00013	743	Gene3D	HUPs	17	155	IPR014729	-
	Sebi551g00013	743	PANTHER	OS08G0249100 PROTEIN	131	679	IPR046958	-
	Sebi551g00013	743	Pfam	Protein kinase domain	401	610	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi551g00013	743	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	518	530	IPR008271	GO:0004672\|GO:0006468
	Sebi551g00013	743	SMART	serkin_6	397	691	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi551g00013	743	CDD	STKc_IRAK	403	670	-	-
	Sebi551g00013	743	CDD	USP_Like	19	153	-	-
	Sebi551g00013	743	FunFam	Putative receptor-like serine/threonine-protein kinase	472	684	-	-
	Sebi551g00013	743	MobiDBLite	consensus disorder prediction	234	260	-	-
	Sebi551g00013	743	ProSitePatterns	Protein kinases ATP-binding region signature.	403	425	IPR017441	GO:0005524
	Sebi551g00013	743	FunFam	probable receptor-like serine/threonine-protein kinase At5g57670	366	471	-	-
	Sebi551g00013	743	ProSiteProfiles	Protein kinase domain profile.	397	675	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi551g00013	743	SUPERFAMILY	Protein kinase-like (PK-like)	378	668	IPR011009	-
	Sebi551g00013	743	Pfam	Universal stress protein family	18	149	IPR006016	-
	Sebi551g00013	743	Gene3D	Transferase(Phosphotransferase) domain 1	472	683	-	-
	Sebi551g00013	743	FunFam	probable receptor-like serine/threonine-protein kinase At5g57670	17	154	-	-
	Sebi551g00013	743	SUPERFAMILY	Adenine nucleotide alpha hydrolases-like	18	157	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi551g00013	Sebi-Chr551	180179	183722	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi551g00013	384	664	Trihelix Transcription Factor Family	AT1G68690	46.853	3.61e-77	259

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VI	Sebi551g00013		Pkinase	1.5e-43	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi551g00013	-		-	pcin:129303222	1051.97