Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi551g00005 ATGGGCACCGAGAATGGAGTAAGCAATGGTGATAACACTGAATGTGCTGAACAAGTTCAGCGTTTGAAAAGCGTAGCACTTCATAATGGGGTGGCAATTGCAGATGGGAATTATGTTACTGAAGAGGCTCAGCACTTGAAAAGTAAAGCAATGAATAATGGGGTCGCTTTTGCTGATGGAAATGGTGTTACTCAAGAGGCTGGACTCTTGAAAAGTGAAGCCGTTAGTAATGGTGAGGTGGCAATGGCAGTTTCTGCCGACGGGGACTTTGGTGGACTTGAATGTTTACGAACTTATAAGAGGCGTAAGCATGTAAAGTCAAGTTCAAAAAGCAAAGTTCAGGGCAGTTACATAGAACGTGTGGAAGCTGCAGCTGCAAGTCATGTAGCAAACCAGGTTGTGAAGGAACCCTGTGATGTAGCTTTAGGCAATGCAGCAGATGATTATTCCCATGGACATTGGGGAAAAGTTGTACTAAAGCATCTATATCAGTCATTAGGTGATGGCAATGGCGGCATTGAGGGGTGCATAAGGGAAGCACTAATTCATCATCCTAAAATTAGTTGTGCGACTACACTTACGGAAGCTTTTAAAATTGATAAAGATGGACAAGAGTGCTCTTCGCAGTTTGATTGTTTGTCTCATAGAACACGGAATGAAGCCAATGGGCATGCAAATGTCATGCGTAGGGGATGTTCTAGTGAACCAAATGGCCATGGTGTGACTGAGATGTCTCAGCGTGTGCTCTGTAATATCTTAACCTCTGAAAAATTCAGTTCATTATGTAAGGTTTTACTTGAAAACTTTCAAGGAATGAAGCCTGAAAATGTATTTGACTTTAGTGTCATGAACTCAAGGATGAAGGAGCAAGCTTATGAACAATCACCAACACTTTTCTTGTCAGATATTCAACAGGTTTGGAGAAAGCTTCAAAACGCTGGTAATGAGATTGTTGCTCTTACCAAGAGCCTCTCCAACATGTCAAGAATTTCCTACTGTGAGCTGGTGGGAATTTCAGCTGAGGGCACATATGAAGATGAAAAGCAAGTGTTCTTTAACCGGGAATCTGACTCTCACATGAAACCAGAGCAGACAGAAGAATGTGCTACCTATAAAATTTGCAGTTGCAGGCATTGTGGAGACAAGGCAGATGGCACAGACTGTTTGGTTTGTGATTCATGTGAGGAGATGTACCATTTGTCCTGTATCCAGCCTCCAGTGAGAGAAATACCCCACAAAAGCTGGTATTGTGCCAATTGTACTGCAAGTGGCATTGGATCTCCGCACGAGGATTGTGTGGTATGTGAAAGGTTGAATGATGCAAAGACCCTGGACAATATAGTTGGTGGTGAAAGCTTCCCTATGAATGAGGAAGCACTACATGAATTTGAAGAGAATTCAAATTGCACCTATGATGGGATTCAAGTATCCATAGGTGGGAAAGAAACACCCAATTGCAAAATGTGTGGAGATAAAGTGGATTGTGAAAAAATTAAAATATGTGGTCACCCTTTTTGCTCCAGTAAGTATTACCATGTAAGGTGTTTGACAAGTAAGCAGTTAAAGTCATATGGTCGCCGTTGGTACTGCCCTTCTTGTTTATGCGGGATTTGCCTCACTGATCGAGATGATGATCAGATTGTACTCTGTGATGGATGTGATCATGCATATCACACCTATTGCATGAAACCTCCACGAACTTCTATTCCAAAGGGGAAATGGTTCTGCAAAAAATGTGATGCTGGAATCAAAGCAATACGCCGGGCAAAAAACGCATATGAGAGTAAGAAGCCACGAACAGGCGAAGACGTTTCAAAGCTAAATGCCAATCTTGAAAAGAAATGCAGCAATAAAGGTGTACAAGAATTGGAAAGGGGTGGAGGAATGGACATGCTTTTAACTGCAGCCAATACTCTTAATTTTGAAGAGAACTTGGCTTCAACCCAGACTGAGTCACGGAGAACATGA 1968 0.4217 MGTENGVSNGDNTECAEQVQRLKSVALHNGVAIADGNYVTEEAQHLKSKAMNNGVAFADGNGVTQEAGLLKSEAVSNGEVAMAVSADGDFGGLECLRTYKRRKHVKSSSKSKVQGSYIERVEAAAASHVANQVVKEPCDVALGNAADDYSHGHWGKVVLKHLYQSLGDGNGGIEGCIREALIHHPKISCATTLTEAFKIDKDGQECSSQFDCLSHRTRNEANGHANVMRRGCSSEPNGHGVTEMSQRVLCNILTSEKFSSLCKVLLENFQGMKPENVFDFSVMNSRMKEQAYEQSPTLFLSDIQQVWRKLQNAGNEIVALTKSLSNMSRISYCELVGISAEGTYEDEKQVFFNRESDSHMKPEQTEECATYKICSCRHCGDKADGTDCLVCDSCEEMYHLSCIQPPVREIPHKSWYCANCTASGIGSPHEDCVVCERLNDAKTLDNIVGGESFPMNEEALHEFEENSNCTYDGIQVSIGGKETPNCKMCGDKVDCEKIKICGHPFCSSKYYHVRCLTSKQLKSYGRRWYCPSCLCGICLTDRDDDQIVLCDGCDHAYHTYCMKPPRTSIPKGKWFCKKCDAGIKAIRRAKNAYESKKPRTGEDVSKLNANLEKKCSNKGVQELERGGGMDMLLTAANTLNFEENLASTQTESRRT 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi551g00005 655 PANTHER OS02G0192300 PROTEIN 290 422 - -
Sebi551g00005 655 Gene3D - 266 423 - -
Sebi551g00005 655 ProSitePatterns Zinc finger PHD-type signature. 530 579 IPR019786 -
Sebi551g00005 655 Pfam PHD-finger 376 422 IPR019787 -
Sebi551g00005 655 Pfam PHD-finger 535 580 IPR019787 -
Sebi551g00005 655 SUPERFAMILY FYVE/PHD zinc finger 363 421 IPR011011 -
Sebi551g00005 655 SMART PHD_3 375 421 IPR001965 -
Sebi551g00005 655 SMART PHD_3 537 580 IPR001965 -
Sebi551g00005 655 SMART PHD_3 485 534 IPR001965 -
Sebi551g00005 655 ProSiteProfiles Zinc finger PHD-type profile. 373 423 IPR019787 -
Sebi551g00005 655 FunFam PHD finger protein EHD3 isoform A 263 424 - -
Sebi551g00005 655 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 477 585 IPR013083 -
Sebi551g00005 655 ProSiteProfiles Zinc finger PHD-type profile. 532 582 IPR019787 -
Sebi551g00005 655 SUPERFAMILY FYVE/PHD zinc finger 534 586 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi551g00005 Sebi-Chr551 109226 117824 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi551g00005 534 597 C2H2 Transcription Factor Family AT3G01460 48.438 2.98e-14 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Sebi551g00005 PHD 2.8e-13 CL0390