Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi54g00105 ATGGCTCCCAGAGTGCCTCCTACGATCAACATTGAACCTGAAGACTGCCCTGAAGCAGTGATTGAGTGGTACAGAATCTCTGGCTTAGAAGATCGCAGAGAAAGTAGGTGGGAACTTCGTTACACATCACCCTCCACTGGCAAGAAACTACATTTCTCTCAGAACTGCTTGCGAGAGCTGCATTCAAGAAGGAGGGTGCAACCTGTCAATAATGGTACCCCAGAATCAGAAGGGTACCCTGATAGCCCTAAGGTGAGGAACACACTTGTACTTCAAATTCTGCACAACCAAGTCAAGGAGAGAAAAGATCAATTTCCTCTTCTGAACAAACAGAATCAGATACTCAACCAAGAAAATGCAGGGTTGCAGCCAAAAAGAGGCAAGAAAAGAGAACGAAAATCTTCATCGGAAGATGAGTTGACTTCGGTGGTTAACACTGAATCTGAAGTTACCCCTAAAAAGTCGTTGGTGTATCGATTAGGCACAAGGGCAAAGCAAGGTGATGAGGCGCAAAGTTCTTACCTTTCAAAGCGCAATCCTCGAACAATAGTTTCTTGGTTGATTGACAACGGAGTGGTTCTTCTAGATTCAAAAGTTTTCTGCCGAGGTACCAACAATGTGGTGAAGAATGGGAGGCTATTACGTAGTGGAATAGCTTGTGATTGTTGTGGTAATATTTTCACTCTGACTCGTTTTGAGACTCATGCTAGTTGTACAAGGCATAGACCTTCCACAAGTATCTTCTTGGAAAATGGAACGTCTTTGTTACAATGCCAAATGGATGCTCTTCGTTTTCTTGACAATATGCAAAGAGATAATTTTCAAGACAGAAACGAGAGCGTTTGTTCCATTTGTCGTTATGGTGGTGAACTTGTGCTCTGTGATCGTTGCCCTTCTTCTTTTCATCTCAGTTGTTTAGGTCTTGATCATGTCCCTGATGGTGATTGGTTCTGCCCACCATGTTGTTGCAGAATATGCAACAGACCCAGATGCAGAGAAGATTCTGAGGATGACGTGGATAATAACATACTCTCTTGTTGTCAATGTGAGCGCAAATTTCACATTGGTTGCCTCAAGAGTAAAGGGTTTTCTGACATGGAAGATCTTCCTAATCCTAACAACAAATGGTTTTGCAAAAAGGAGTGTGAGAACATATTTTGTACTCTGCAGAAGTTGGTGGGGAACCCAATTCGTGTGGCTGCTCATACTCTGGATTGGACTTTGTTGAAGACATTTAGAAGTGATGATAACTCTGGAGGAGATCTTTCACCTGATGGACTTGAAAGGCTGAGTCAAATTGAAAGCAATAGGGGTTCTGAATTTAATCGTCCTAACTGTGGTGGATTCTACACTGTGATTCTGGAGATGAATGATGAAGTGGTTTCTGTTGCTACTGTAAGGATTCATGGGCAGAAGGTTGCAGAATTACCCTTTGTGGCTACTAGTGAACAGTATAGAAAGCTTGGACTGTGTCGCATCTTGATGAATGAGCTTGAGAAGCAGTTGACTCAATTAGGAGTAGAGAGTATGGTTTTGCCTTCCTCTAATAATGCAGTAGACACATGGACTAACTCATTTGACTTTGCAAGGATGACTGATTCAGATAAGTCTCAGTTTCTTGAGTACAGTTTTCTAGAATTTCAGGACACCACCTGGTGCCACAAACCATTATTGGTAAATCCTTCAATGAATTGCATGGCGTAA 1704 0.4225 MAPRVPPTINIEPEDCPEAVIEWYRISGLEDRRESRWELRYTSPSTGKKLHFSQNCLRELHSRRRVQPVNNGTPESEGYPDSPKVRNTLVLQILHNQVKERKDQFPLLNKQNQILNQENAGLQPKRGKKRERKSSSEDELTSVVNTESEVTPKKSLVYRLGTRAKQGDEAQSSYLSKRNPRTIVSWLIDNGVVLLDSKVFCRGTNNVVKNGRLLRSGIACDCCGNIFTLTRFETHASCTRHRPSTSIFLENGTSLLQCQMDALRFLDNMQRDNFQDRNESVCSICRYGGELVLCDRCPSSFHLSCLGLDHVPDGDWFCPPCCCRICNRPRCREDSEDDVDNNILSCCQCERKFHIGCLKSKGFSDMEDLPNPNNKWFCKKECENIFCTLQKLVGNPIRVAAHTLDWTLLKTFRSDDNSGGDLSPDGLERLSQIESNRGSEFNRPNCGGFYTVILEMNDEVVSVATVRIHGQKVAELPFVATSEQYRKLGLCRILMNELEKQLTQLGVESMVLPSSNNAVDTWTNSFDFARMTDSDKSQFLEYSFLEFQDTTWCHKPLLVNPSMNCMA 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi54g00105 567 ProSiteProfiles Zinc finger PHD-type profile. 279 324 IPR019787 -
Sebi54g00105 567 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 447 519 IPR016181 -
Sebi54g00105 567 CDD NAT_SF 452 512 - -
Sebi54g00105 567 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 395 558 IPR000182 GO:0016747
Sebi54g00105 567 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 324 386 IPR013083 -
Sebi54g00105 567 Pfam PHD-finger 281 323 IPR019787 -
Sebi54g00105 567 Gene3D - 432 539 - -
Sebi54g00105 567 MobiDBLite consensus disorder prediction 115 147 - -
Sebi54g00105 567 Pfam Acetyltransferase (GNAT) family 437 522 IPR000182 GO:0016747
Sebi54g00105 567 SMART PHD_3 323 382 IPR001965 -
Sebi54g00105 567 SMART PHD_3 281 322 IPR001965 -
Sebi54g00105 567 Pfam Tify domain binding domain 211 261 IPR032308 -
Sebi54g00105 567 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 273 323 IPR013083 -
Sebi54g00105 567 PANTHER PHD FINGER PROTEIN 12 37 417 IPR042163 GO:0003714|GO:0045892
Sebi54g00105 567 SUPERFAMILY FYVE/PHD zinc finger 268 332 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi54g00105 Sebi-Chr54 2523669 2525547 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi54g00105 97 505 PHD Transcription Factor Family AT5G58610 36.854 4.93e-84 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Sebi54g00105 Acetyltransf_1 9e-08 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi54g00105 - - aprc:113866262 478.018