Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi54g00104 ATGTTGTGCGCTTGCTCCGGTGAGCAATTCAAATTTGAAGAACCGCCACAGTCGCCGGAATCCCTCGCAACAAGGGATTTCTCTGCCAGTGGACTTTCTTCTAGGACTGCGGATTGGGAATCCAAATTTGATGAAACTCAAGTAGAAGAAGTTGAATCTACTCTTAAAGAAGCTCTTTCCTTAAACTATGAGGAAGCTAGGGCTTTGCTGGGGAGACTTGAATACCAAAGAGGCAACTTGGAAGCTGCCCTTCAAGTATTTCAAGGTATAGACATCAAGGGTTTGACCCCAAGGATGATCAAGGCAATTGCTGAAAGAATTAAGCAAAGAAAACCACGTTCCAAGGCTGACATAGTCATTCTTCCAAATGTCTTGTCACTGCATTCAGTAAGCCTGCTTCTTGAGGCAATTTTGCTTAAAGCATTATCCTTAGAGGAACTTGGAAGATACATTGATGCTGCAAAGGAGTGCAGAATAATTCTGGATACGGTTGAATCTGCCCTTCCTAATGGAATGCCTGAGGGTATTGGTGAAGATTGTAAGTTGCAAGAAATGTTCCACAGAGCATTGGAGTTGCTTCCAAGCTTGTGGATCAGGGCAGGCTTTCTAGATGAAGCTGTCACTGCATATCGTCGTGCTTTGGTCAAGCCATGGAATTTGGAGCAACGAAGGTTGGCTGGTGTGCAAAAATATTTAGCCACAACTCTGCTCTATGGTGGTGTTGAAGTAAGCCTACCCTCTCACTGGCAAGTGTGGGGTCACATAACACCCAAGAGTAACATTGAAGAAGCAATACTTTTGCTATTAATACTGATGAGCAAGGTGGCAACTCGGGAAATAGACTGGGATGCTGAAATAATGGATCATCTTACATTTGCACTTTCAGTTACTGGGATGTTTGAGTCGTTGGCAGATCATGTAGAGCAGATCCTTCCAGGCATCTATAGTCGAGCTGAGAGGTGGTACTTTCTTGCTCTGTGTTATAGTGCAGCAGGACAAAATGAAGCAGCATTGAACCTTTTGAGGAAGGCACGTGGTAGTTCTGAGGCCAAGCACATACCCCATTTTCAATCATTTTTGTTTGGAGCAAAACTTTGTTCTCAAGATCCTCGCTATGCTCATGAAGGCATTAACTTTTCACGTGAAGTTATTGATTTAGCTAAGCACCAAAATGAGCATTTTTTGGGTCAAGGCCGCAAATTTCTTGGTGTTTGCTATGGAGCTGCAGCTAGACTTTCTGTATTGGATCATGAAAGAAGTATATTTCAAAAAGAGGCTTTGAATTTTCTAAACTGTGCTGCTGTAAGTGAGAATGGTGACCCAGAAGTGATGTTCAGTCTTGGACTGGAAAATGCAATTCAAAGGAATCTGGATGCAGCTTATGACAATATAATGATGTGCCCAGACATGATAGTCGGCAGTTCAAGAAGAGGTTGGCAGCTTTTAGCACTCATTGTATCAGCACAACAGCGGTTTAAGGATGCTGAAACTATAGTTGATTTTGCTTTAGATGAGGCTGGGGGGATGGATCAGTTAGAACTTTTAAGATTGAAAGCAGTACTTCAAATTGCTCAGCAGCAACCCAAGCAAGCAATTGAGAGCTACAGAATCTTGCTAGCACTAATTCAAGCAAAAAAGGAGCTATTGCTTCAAGATAAGAACTCTGATGAAGCAAAAACATTCAGGAAAGAGGTAGTAACGGAAAGGAAGTTGGAAATGGAAGCCTGGCAGGATTTGGCTACCATTTATGCCGATGTTGGTTCCTTATTTGATGCAAAAGCTTGTGTTGACAAAGCCCAATTGATAGATTTTTTTTCTCCAAGAAGTTGGCATATTACAGGGATGTTGCTTGAATCTCAATCATTATACAAAGAAGCCTTTGTTTCCTTTTCAGTGTCATTGTCAATAGAACCAGATTACACTCCCAGCATCATTTCAACTGCAAAATTGTTGCTGAAACTTGGTATGCAATCACTTCCAATTGCAAGAAGCTTTTTAATGAATGCTTTGCGATTAGAACCCACAAACCATGATGCTTGGTTCAACCTTGGATTGGTTTCAAAAATGGAAGGTTCATTACAGCAAGCAGCAGATTTCTTTCAAGCTGCATATGAACTGAAGCTTTCAGCTCCAGTGCAAAAATTTGAGTAA 2151 0.4161 MLCACSGEQFKFEEPPQSPESLATRDFSASGLSSRTADWESKFDETQVEEVESTLKEALSLNYEEARALLGRLEYQRGNLEAALQVFQGIDIKGLTPRMIKAIAERIKQRKPRSKADIVILPNVLSLHSVSLLLEAILLKALSLEELGRYIDAAKECRIILDTVESALPNGMPEGIGEDCKLQEMFHRALELLPSLWIRAGFLDEAVTAYRRALVKPWNLEQRRLAGVQKYLATTLLYGGVEVSLPSHWQVWGHITPKSNIEEAILLLLILMSKVATREIDWDAEIMDHLTFALSVTGMFESLADHVEQILPGIYSRAERWYFLALCYSAAGQNEAALNLLRKARGSSEAKHIPHFQSFLFGAKLCSQDPRYAHEGINFSREVIDLAKHQNEHFLGQGRKFLGVCYGAAARLSVLDHERSIFQKEALNFLNCAAVSENGDPEVMFSLGLENAIQRNLDAAYDNIMMCPDMIVGSSRRGWQLLALIVSAQQRFKDAETIVDFALDEAGGMDQLELLRLKAVLQIAQQQPKQAIESYRILLALIQAKKELLLQDKNSDEAKTFRKEVVTERKLEMEAWQDLATIYADVGSLFDAKACVDKAQLIDFFSPRSWHITGMLLESQSLYKEAFVSFSVSLSIEPDYTPSIISTAKLLLKLGMQSLPIARSFLMNALRLEPTNHDAWFNLGLVSKMEGSLQQAADFFQAAYELKLSAPVQKFE 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi54g00104 716 SUPERFAMILY TPR-like 65 462 IPR011990 GO:0005515
Sebi54g00104 716 SUPERFAMILY TPR-like 566 706 IPR011990 GO:0005515
Sebi54g00104 716 SUPERFAMILY TPR-like 424 602 IPR011990 GO:0005515
Sebi54g00104 716 PANTHER PROTEIN NPG1 1 716 IPR043376 -
Sebi54g00104 716 Gene3D Tetratricopeptide repeat domain 424 712 IPR011990 GO:0005515
Sebi54g00104 716 ProSiteProfiles TPR repeat profile. 677 710 IPR019734 GO:0005515
Sebi54g00104 716 SMART tpr_5 512 545 IPR019734 GO:0005515
Sebi54g00104 716 SMART tpr_5 318 351 IPR019734 GO:0005515
Sebi54g00104 716 SMART tpr_5 573 606 IPR019734 GO:0005515
Sebi54g00104 716 SMART tpr_5 607 640 IPR019734 GO:0005515
Sebi54g00104 716 SMART tpr_5 677 710 IPR019734 GO:0005515
Sebi54g00104 716 Gene3D Tetratricopeptide repeat domain 39 345 IPR011990 GO:0005515
Sebi54g00104 716 Coils Coil 56 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi54g00104 Sebi-Chr54 2489651 2492821 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi54g00104 1 715 Calmodulin-binding Proteins AT1G27460 58.275 0.0 842
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi54g00104 K21843 - gmx:100780807 1157.9