Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi54g00097 ATGGTTGCTGGTAGGGCAAGAGCTGTTGTGGTGGGAGTTGGTCCTAATACTGCCATGGGCAGCATACGTGATTCAATGTTGCGAACAGAGGATATAATATCTGTAATCACGTTAGTCTTGGGATTTTCTTCAGCGATACTGAGGCTGTTGTGCTGCATAAGGAATTTGAGGGTAGATAATCTTGGGCGTGCAGTCTCTGCTGCATACTATCAGCTGAGTCAGCTAGTTGTTAGAGGTGACACCATTGAAAAGAAGCTAGACGAGTTTGGTACCTTTTTGGCCAAGGTTATTGCTGGGATTTGCATATTGGTGTGGATTGTAAACATTGGTCACTTTCATGACCCTTCTCATGGTGGTTTCTTGCGTGGTGCAATTCATTATTTAAGGCATCATGCTGGAGTCTTGAATTTTTCTGTTTTGCATATTGCAGTTGCTCTGGCAGTTGCAGCAATTCCTGAAGGGCTCCCTGCTGTTGTTACAACGTGTTTGGCTCTTGGAACAAAGCGTATGGCGAGGTTGAATGCCATTGTCCGCTCTTTGCCATCCGTTGAGACCTTGGGCTGCACCACTGTAATTTGCAGTGACAAAACTGGGACTTTAACTACCAATATGATGTCTGTTGCGAAGATATGTGTTGTTGAATCTGCAAAACGTAGTCCTTTTGTTACCGAATACAGTGTCAGTGGAACAACATATGACCCTGAAGGCATAATCTTTGATAAGACAGGGATGCAGTATAATCCTGATAAAGGAAAGTTTGAAAAAATTGGTGAGTCAACTGAGGTGGCACTGCGTGTTTTGGCAGAAAAGGTGGGTCTTCCTGGTTTTAATTCTATGCCATCAGCCTTGAATATGTTGAGCAAGCATGAGCGTGCTTCTTACTGTAACCGTTACTGGGAGGAACAGTGTAGAAAGATGTTTTTGGAATTTTCTCGAGATAGGAAAATGATGAGTGTCCTTTGTAGCCGGAACCAGTTGCATGTTCTATTCTCAAAGGGTGCTCCAGAAAGTATAATCTCTAGATGTACAACCATTCTGTGCAATGATGATGGTTCTGTTGTGCCACTTACTGCTGATATTCGTGCAGAGCTGGACTCAAAATTCCACAGTTTTGCAGGAAAAGAAACATTGAGATGCCTAGCTTTGGCCTTGAAATCGATGCCCTCAGCACAACAAACACTGTCCTTTGATGATGAGAAAGATCTTACATTTATTGGATTGATTGGGATGCTGGATCCACCAAGAGATGAAGTAAGAAATGCCATGCTTTCATGTATGACTGCTGGCATACGTGTTATAGTTGTCACTGGGGATAACAAGATTTTTCTGAACATTCTTACACTGCTTTCTGAGTTTGAAGAACTTCCAGCGCTGCAACAAACTATAGCATTGCAACGTATGGCACTTTTTACCAGGGTTGAGCCTTCTCATAAAAGGATGCTGGTTGAAGCATTACAGCACCAGAATGAAGTGGTTGCAATGACGGGTGATGGGGTCAATGACGCACCTGCACTGAAGAAGGCTGATATAGGAATTGCTATGGGTTCAGGGACAGCTGTTGCTAAGGTGTCATCAACTGTCTGTACTTTCCACTTTTTATTCCCATGTCTGAGTGCTTCAGACATGGTGCTGGCTGATGATAACTTTGCTTCAATTGTTGCGGCTGTGGCAGAGGGAAGGGCTATATACAATAATACAAAACAGTTTATTAGATACATGATTTCTTCCAATATTGGTGAAGTAGTATGTATATTTGTGGCTGCTGTGCTTGGAATACCTGATACACTGGCCCCTGTCCAGTTGCTTTGGGTTAATTTGGTTACTGACGGATTGCCTGCCACTGCTATTGGGTTCAATAAGCAAGATTCTGATGTGATGAAGGCTAAGCCTCGAAAGGTGAATGAAGCAGTTGTTTCGGGTTGGCTCTTCTTTCGTTATTTGGTAATTGGAGGTGTGGCTGGTGGAGCGGTCCAAGCAACATTGGTAGTGTATCTGTTGAGATACCACATTATGGCCCGTGGTGGCAATGGTCAAACTTGGGACATGTTCAGATACACACTGTCAGCCCTAGCTGCCTTCATTGTGGCCATCCTAGGCTGCCTTGGTAGCGTCCATTATTGCCATTAG 2127 0.4377 MVAGRARAVVVGVGPNTAMGSIRDSMLRTEDIISVITLVLGFSSAILRLLCCIRNLRVDNLGRAVSAAYYQLSQLVVRGDTIEKKLDEFGTFLAKVIAGICILVWIVNIGHFHDPSHGGFLRGAIHYLRHHAGVLNFSVLHIAVALAVAAIPEGLPAVVTTCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNMMSVAKICVVESAKRSPFVTEYSVSGTTYDPEGIIFDKTGMQYNPDKGKFEKIGESTEVALRVLAEKVGLPGFNSMPSALNMLSKHERASYCNRYWEEQCRKMFLEFSRDRKMMSVLCSRNQLHVLFSKGAPESIISRCTTILCNDDGSVVPLTADIRAELDSKFHSFAGKETLRCLALALKSMPSAQQTLSFDDEKDLTFIGLIGMLDPPRDEVRNAMLSCMTAGIRVIVVTGDNKIFLNILTLLSEFEELPALQQTIALQRMALFTRVEPSHKRMLVEALQHQNEVVAMTGDGVNDAPALKKADIGIAMGSGTAVAKVSSTVCTFHFLFPCLSASDMVLADDNFASIVAAVAEGRAIYNNTKQFIRYMISSNIGEVVCIFVAAVLGIPDTLAPVQLLWVNLVTDGLPATAIGFNKQDSDVMKAKPRKVNEAVVSGWLFFRYLVIGGVAGGAVQATLVVYLLRYHIMARGGNGQTWDMFRYTLSALAAFIVAILGCLGSVHYCH 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi54g00097 708 Gene3D - 78 668 - -
Sebi54g00097 708 FunFam Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 544 690 - -
Sebi54g00097 708 Pfam haloacid dehalogenase-like hydrolase 190 509 - -
Sebi54g00097 708 PANTHER CALCIUM-TRANSPORTING ATPASE 2 661 - -
Sebi54g00097 708 Pfam E1-E2 ATPase 81 172 - -
Sebi54g00097 708 Gene3D - 190 554 IPR023214 -
Sebi54g00097 708 NCBIfam HAD-IC family P-type ATPase 465 520 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi54g00097 708 NCBIfam HAD-IC family P-type ATPase 137 218 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi54g00097 708 SUPERFAMILY Calcium ATPase, transmembrane domain M 81 696 IPR023298 -
Sebi54g00097 708 PRINTS H+-transporting ATPase (proton pump) signature 495 511 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi54g00097 708 PRINTS H+-transporting ATPase (proton pump) signature 467 483 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi54g00097 708 SFLD Haloacid Dehalogenase 174 562 - -
Sebi54g00097 708 Gene3D - 203 413 IPR023299 GO:0000166
Sebi54g00097 708 Pfam Cation transporting ATPase, C-terminus 594 698 IPR006068 -
Sebi54g00097 708 FunFam Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 65 217 - -
Sebi54g00097 708 FunFam Calcium-transporting ATPase 238 413 - -
Sebi54g00097 708 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 200 410 IPR023299 GO:0000166
Sebi54g00097 708 ProSitePatterns E1-E2 ATPases phosphorylation site. 195 201 IPR018303 -
Sebi54g00097 708 PRINTS P-type cation-transporting ATPase superfamily signature 428 438 - -
Sebi54g00097 708 PRINTS P-type cation-transporting ATPase superfamily signature 495 514 - -
Sebi54g00097 708 PRINTS P-type cation-transporting ATPase superfamily signature 406 417 - -
Sebi54g00097 708 PRINTS P-type cation-transporting ATPase superfamily signature 193 207 - -
Sebi54g00097 708 SUPERFAMILY HAD-like 399 532 IPR036412 -
Sebi54g00097 708 SFLD p-type atpase 174 562 IPR044492 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi54g00097 Sebi-Chr54 2325005 2352922 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi54g00097 1 680 Primary Pumps ATPases(2) AT1G10130 67.680 0.0 926
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi54g00097 K05853 - gmx:100783509 965.681