Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi54g00094 ATGCTATCTAAAGGGACAAGAGAAGGGGATGAGAAGCTAGGAGCAAGCTTGAAAAGTGGTGTCAAATTGGATCTGAAGATGTTGATTGAGGAGCTGGAATCAATTGATGTGCCCTCAGTTTTTATCTGCCCAATTTCTCTTGAGCCAATGCGAGACCCTGTGACCCTTTGCACAGGTCAAACCTATGACAGGGCCAATATTCTTACATGGTTCTCTCTAGGTCACAATACTTGTCCCACAACAATGCAGGAGCTTTGGGATGATTCAATCACCCCCAACAGGATTCTCAACCAGTTCATTCTTAACTGGTTCTCTCAGAAATACTTAGCCATGAAAAAGAAGCTAGAGGATGTGCAAGGAAGAGCCTTGGAGCTCTTGGACAAGCTCAAGAAGGTAAAGGGTCAAGCTAGAGTTCAAGCTCTTAAGGAACTTCACTACCTTGTTGATTCACATGCATCTACCAGGAAGACAGTTGCAGAAAAAGGTGGACTTTCTTTAATTTTTTCTTTCTTGGGTCCTTTCACTTCCCATGCTGTTGGGTCTGAAGTCATTGGGATTCTTGTGAATTTGGATTTGAGTTCTGAGTTGAAGAAAAATCTGATGCATCCAGCCAAGGTATCTTTGTTGGTGGATATTATGAATGAGGGAACCATTCAGACAAAGATGAATTGTGCTAAATTGATTGAAATGTTGCTGATGGAAGGGAATGGGTCAGAGAGTGAGACCCAAGTTGTGTCAAGCTTGAGTCTTTTGGTTGGATTGTTAAGACTAATAAGGGATCAGAAGCACCCAAATGGGGTCCTAACTGGACTCATATTGCTCAAAATTATATGTTCTCATGAATCAGTTAGAAGCTCGGTTGTTAGCATTGGAACTGTGGCTCAATTGATAGAACTTTTGCCTATTTTGAACAATGAGTGTTTAGAGATAGCACTACATATTCTTGAGGTGTTGTCAACCCTTCCAGAAGGAAGAGTGGCTTTAAAAGAATGTCCAAACATTATACCCAATGTAGTCAAGTTGTTGATGAGAGTCTCAGAGAGTTGCACACAATTTGCATTGTCAATATTGTGGGCTATCTACAAACTTGCCCCAAAAGAATGTGCTTCTAAGGCAGTGGAGGCAGGGTTGGCGGTGAAGCTACTTCTAGTGATTCAGAGTGGTTGCAACCCAGTGTTGAAGCAGAAATCTGCTGAGTTTTTAAAAATGTGCAGTCTTGATTACTCTACTAGTATCTTGATTTCTAAGTGTATGCTTACTACAACAATACAATGA 1275 0.4118 MLSKGTREGDEKLGASLKSGVKLDLKMLIEELESIDVPSVFICPISLEPMRDPVTLCTGQTYDRANILTWFSLGHNTCPTTMQELWDDSITPNRILNQFILNWFSQKYLAMKKKLEDVQGRALELLDKLKKVKGQARVQALKELHYLVDSHASTRKTVAEKGGLSLIFSFLGPFTSHAVGSEVIGILVNLDLSSELKKNLMHPAKVSLLVDIMNEGTIQTKMNCAKLIEMLLMEGNGSESETQVVSSLSLLVGLLRLIRDQKHPNGVLTGLILLKIICSHESVRSSVVSIGTVAQLIELLPILNNECLEIALHILEVLSTLPEGRVALKECPNIIPNVVKLLMRVSESCTQFALSILWAIYKLAPKECASKAVEAGLAVKLLLVIQSGCNPVLKQKSAEFLKMCSLDYSTSILISKCMLTTTIQ 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi54g00094 424 Coils Coil 115 135 - -
Sebi54g00094 424 ProSiteProfiles U-box domain profile. 36 110 IPR003613 GO:0004842|GO:0016567
Sebi54g00094 424 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 36 110 IPR013083 -
Sebi54g00094 424 CDD RING-Ubox_PUB 38 88 IPR045210 -
Sebi54g00094 424 SMART Ubox_2 40 103 IPR003613 GO:0004842|GO:0016567
Sebi54g00094 424 Pfam U-box domain 37 107 IPR003613 GO:0004842|GO:0016567
Sebi54g00094 424 PANTHER WDSAM1 PROTEIN 31 411 IPR045185 GO:0061630
Sebi54g00094 424 SUPERFAMILY RING/U-box 31 107 - -
Sebi54g00094 424 Gene3D - 111 409 IPR011989 -
Sebi54g00094 424 SUPERFAMILY ARM repeat 132 407 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi54g00094 Sebi-Chr54 2284104 2285378 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi54g00094 22 424 U-box Gene Family AT3G49810 63.772 0.0 516
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi54g00094 - - gmx:100808281 646.351