Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi54g00093 ATGGCTTCTTCGTCTCCTTCGGCTTCTCGTGAGGGACACCACAGAGGGGTTAGTAAGCGACCCTGGGGACGCTACGCTGTTGAGATACGCGACCCTTGGAAGAAGACATGTGTCTGGTTGGGTACATTTGATACTCCTAAAGAGGTTTCCCTTGCCTACGACGGCGCCGCTCATTCCCTTCGTGTTGCTAAGGCCAAGACCAACTTCCCTCTGGCGCCGGTCGCTCCCGCCCTCTGCCTCGACCTCAATGCCCCAACCTCTGATCATCATTGCTGGTCCTCCGTCCCCACATGTAGCCTCACCGGTTCGCCTCCTCTGTCAGACGCGAGCTCTCCAACAGCAGCGGGAGAAGAGGCAGCGTCTCTATTTGGGACCTGTTGGGAGAAATACAAAGAGGAGAAGGACACTATTGAGAGAAGAGAGGCACTCTATATCTTGGCTTTTCTAACCTATTTTGGGGAGATTTGTTTTCACAATGTGGCCCACACGTTTGATTCATTTCTCGCCTCTTACATTCATTCACCAAACACAACAACACCTACTAATCAACCCTATTTCACTCCTTCTATTTCCTTGCCAATTTCACTATGA 591 0.5127 MASSSPSASREGHHRGVSKRPWGRYAVEIRDPWKKTCVWLGTFDTPKEVSLAYDGAAHSLRVAKAKTNFPLAPVAPALCLDLNAPTSDHHCWSSVPTCSLTGSPPLSDASSPTAAGEEAASLFGTCWEKYKEEKDTIERREALYILAFLTYFGEICFHNVAHTFDSFLASYIHSPNTTTPTNQPYFTPSISLPISL 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi54g00093 196 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 12 107 - -
Sebi54g00093 196 PRINTS Ethylene responsive element binding protein signature 36 52 IPR001471 GO:0003700|GO:0006355
Sebi54g00093 196 PRINTS Ethylene responsive element binding protein signature 14 25 IPR001471 GO:0003700|GO:0006355
Sebi54g00093 196 SMART rav1_2 13 76 IPR001471 GO:0003700|GO:0006355
Sebi54g00093 196 CDD AP2 13 70 IPR001471 GO:0003700|GO:0006355
Sebi54g00093 196 SUPERFAMILY DNA-binding domain 13 71 IPR016177 GO:0003677
Sebi54g00093 196 Gene3D AP2/ERF domain 13 72 IPR036955 GO:0003700|GO:0006355
Sebi54g00093 196 Pfam AP2 domain 13 60 IPR001471 GO:0003700|GO:0006355
Sebi54g00093 196 ProSiteProfiles AP2/ERF domain profile. 13 70 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi54g00093 Sebi-Chr54 1956540 1957130 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi54g00093 4 83 AP2-EREBP Transcription Factor Family AT1G28360 68.750 2.36e-31 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sebi54g00093 AP2 6.3e-07 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi54g00093 - - aip:107624305 157.918