Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi54g00088 ATGTGTTTCCACAACGACGAAGCGGTCCAGTCTCCGGTTCTCGAAACCATGCTGACAGAAAGTGAAATACAATACCTCTTTTCCCTCATTAATCATCAATCCACAGAACCGGCCAGCCCAGGCTCCGGTTCACAGGGATCGAACCGGGCGGTTTACTCAACAGAGGAAAGAAAGCTCAGGCGCATGCAATCGAACCGGGAATCGGCCCGACGGTCCAGGTGCAGAAAGAAGAAGCATTTAGAGAACCTCACGAACCAAGTGAACCGTTTGAGAATTCAAAACCGAGAACTCAAAAACCGATTAGCCTTCACCATGCATCAGCATCTCCTCCTATCCCTACAGAATGATCAACTAAGATCCGAATCCGTTAACCTTCTGGCCAAACTTTCGGATCTATGTGGGATTTTAAATAGTATGCTTTCACAATAG 429 0.4732 MCFHNDEAVQSPVLETMLTESEIQYLFSLINHQSTEPASPGSGSQGSNRAVYSTEERKLRRMQSNRESARRSRCRKKKHLENLTNQVNRLRIQNRELKNRLAFTMHQHLLLSLQNDQLRSESVNLLAKLSDLCGILNSMLSQ 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi54g00088 142 Pfam bZIP transcription factor 56 101 IPR004827 GO:0003700|GO:0006355
Sebi54g00088 142 MobiDBLite consensus disorder prediction 53 69 - -
Sebi54g00088 142 Coils Coil 80 107 - -
Sebi54g00088 142 PANTHER BZIP TRANSCRIPTION FACTOR 44 38 139 - -
Sebi54g00088 142 MobiDBLite consensus disorder prediction 34 75 - -
Sebi54g00088 142 SUPERFAMILY Leucine zipper domain 57 109 IPR046347 GO:0003700|GO:0006355
Sebi54g00088 142 Coils Coil 52 72 - -
Sebi54g00088 142 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 60 75 IPR004827 GO:0003700|GO:0006355
Sebi54g00088 142 CDD bZIP_plant_GBF1 58 108 IPR045314 GO:0003700|GO:0006355
Sebi54g00088 142 MobiDBLite consensus disorder prediction 34 52 - -
Sebi54g00088 142 Gene3D - 55 108 - -
Sebi54g00088 142 FunFam BZIP transcription factor 55 107 - -
Sebi54g00088 142 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 55 102 IPR004827 GO:0003700|GO:0006355
Sebi54g00088 142 SMART brlzneu 53 117 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi54g00088 Sebi-Chr54 1794471 1794899 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi54g00088 12 136 bZIP Transcription Factor Family AT3G49760 40.458 1.06e-19 78.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Sebi54g00088 bZIP_1 1.2e-08 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi54g00088 - - gmx:102661984 211.075