Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi54g00080 ATGGATCTTGGGGCGGTGGGTTTGGATGGGTTGGTGGGTTCAGACACTGGTTTTGTTCCTCTTGCTTCTACAGATCCTGAAACTAAGCACAGTAAGTGGTACGGATCTGGGTTCCTTAAGCAACAGAGATCTGCCATCACTGAAGATGAGTGGAGGAGTTCCAAACTGGCTAAGACTGATGACATTTCTGCTTCCAAAGCAATGCTTTTCCAGCACAAGAACTCCTTACTGAGATCTAATGCTACTCTCTTTTCTGATGGTTACAATTCTGGAAGCATGCATGGGATGGTAACAGGGGCAAGAGGGCCATTCACTCCTTCTCAGTGGATGGAGCTAGAACACCAGGCCCTGATCTACAAATACATAACATCAAATGTTCCTGTACCATCTCATCTTCTCATCCCCATCAAGAAAGCACTTGAATCTGCTGGCTTCTATAACTTGTCAACTGGTCTTTTGAGACCCAATGCCAGTAATGGGGGATGGGGAGGTTTCCATCTGGGGTTCTCGAATAACACAGATCCTGAGCCAGGAAGGTGTAGGAGAACAGATGGGAAGAAATGGCGATGCTCAAGAGATGCCGTTGTGGACCAAAAGTATTGTGAACGGCATATGAACAGAGGACGCCATCGTTCAAGAAAGCCTGTGGAAGGCCAATCAGGCCATGCCGTCACTGTGGGGACCACCAACACCACCAACAGCAACACGGTTCCCTCAACCACTGTATCCACCTTTGCACAACATCATCAACAACCACCTAAGAATATGACCCTCTTGCATCTTGCTCTATACCTCTTCGCCTAA 804 0.4764 MDLGAVGLDGLVGSDTGFVPLASTDPETKHSKWYGSGFLKQQRSAITEDEWRSSKLAKTDDISASKAMLFQHKNSLLRSNATLFSDGYNSGSMHGMVTGARGPFTPSQWMELEHQALIYKYITSNVPVPSHLLIPIKKALESAGFYNLSTGLLRPNASNGGWGGFHLGFSNNTDPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHRSRKPVEGQSGHAVTVGTTNTTNSNTVPSTTVSTFAQHHQQPPKNMTLLHLALYLFA 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi54g00080 267 Pfam QLQ 103 136 IPR014978 GO:0005524|GO:0005634|GO:0006355
Sebi54g00080 267 ProSiteProfiles WRC domain profile. 174 218 IPR014977 -
Sebi54g00080 267 ProSiteProfiles QLQ domain profile. 103 138 IPR014978 GO:0005524|GO:0005634|GO:0006355
Sebi54g00080 267 PANTHER GROWTH-REGULATING FACTOR 5 72 248 IPR031137 GO:0005634|GO:0006351|GO:0032502
Sebi54g00080 267 MobiDBLite consensus disorder prediction 207 239 - -
Sebi54g00080 267 SMART QLQ_2 102 138 IPR014978 GO:0005524|GO:0005634|GO:0006355
Sebi54g00080 267 Pfam WRC 175 217 IPR014977 -
Sebi54g00080 267 MobiDBLite consensus disorder prediction 222 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi54g00080 Sebi-Chr54 1519638 1521329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi54g00080 35 222 GRF Transcription Factor Family AT2G22840 53.448 1.11e-57 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Sebi54g00080 WRC 1.8e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi54g00080 - - aprc:113865097 346.665