Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sebi54g00076 | ATGGGTGATCTTGAAAATGCTATGGCCATGGGGCTTCAACATGGAAAGGAGGGCATTGTGAATTGTCCACTATCAGGTTTGAGGACAAGTGTTTCAGAAATGACCATTAGTTCTGTGTCTTTGGCTATGCCTTCAGGCTTAGCTAATCCTTTTCTTGCTTCTTCTGCTTGGGATCCTCTTGTTTCCTTGAATCAGATTCAAACTCTCAGAGGCTCTCCAATGGTTTCTCATAGTGAGTTTTCCAATTCATCTTACCCTCTTGTTTTGAAAAACCAGGGAATGAGTAGCAACTCCCTCATTGTTCAACATGTGTCTGATTCAAATCTTGTGGACATGGTCCCCAATGTTCCCTCCTATGGAAGTGGTAACTTCTCAGAAATGATTGGCTCCTTTGGCCAAACTGGGTCAGGTGATATAGCTAACACAGTGTATCAACCAAATTGTTATCCAAGCAATGTATCAGCCAAACTGGGTCCTATGAATAATGAGCAATCTCAAGGTGAAGGTTCAACTCCTGAAGAGGGAGAAACAGGATCTGCACTTGATGAAAATAGAAGAAAGCGTGGACTTGACTATAATTCTACTTTCAGTCCAAATAAGTATGCTGAGGGGGATGCAATTGAAGATTCTTCTGGGAAGAGTTTTGATGGTGTGAAAGAACAATATGAAAAGAAACCAAAAGTTGAACAAAATAGTAGTGCAAATTTGCGTGGTAAACAATTGCTGAAGCAAAAGAAAGATGAGTCTCACAGTGGAGATGCTCCCAAAGAAAATTTCATTCATGTGAGAGCCCGAAGAGGTCAAGCCACAAACAGTCACAGCCTTGCAGAAAGGGTTAGGAGAGAAAAGATTAGTGAGCGAATGAGGTTGCTTCAAGAACTTGTTCCAGGATGCAACAAGATAACGGGTAAAGCGGTAATGCTTGATGAGATTATCAACTATGTGCAATCACTGCAACAACAGTTTTTGTCCATGAAACTTGCCATAGTAAACCCAGAGCTGAATTTTGATGCAGAGCGGATCCACTCCAAAGATGTTCACCGGTCACACAATGGACATGGACCTGTTAGTGGATATGGTCCTGGTATCAACTACTCTCATCCATTCCCTTCTAGAAGTTTCCAGGGAACACTAGCGGCCATGCCCAGCACTTCAACACAATACCCTCCTTTGTCACAGCCTGTTTTGAACCACGAGTTCCAAAGCCTTTATGGAATGACCTATGATTCCAGTTCAACTCTTGACAATTTGGGATCCGATGGATGGTTGAAAACAGAGTTATAG | 1284 | 0.4229 | MGDLENAMAMGLQHGKEGIVNCPLSGLRTSVSEMTISSVSLAMPSGLANPFLASSAWDPLVSLNQIQTLRGSPMVSHSEFSNSSYPLVLKNQGMSSNSLIVQHVSDSNLVDMVPNVPSYGSGNFSEMIGSFGQTGSGDIANTVYQPNCYPSNVSAKLGPMNNEQSQGEGSTPEEGETGSALDENRRKRGLDYNSTFSPNKYAEGDAIEDSSGKSFDGVKEQYEKKPKVEQNSSANLRGKQLLKQKKDESHSGDAPKENFIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQFLSMKLAIVNPELNFDAERIHSKDVHRSHNGHGPVSGYGPGINYSHPFPSRSFQGTLAAMPSTSTQYPPLSQPVLNHEFQSLYGMTYDSSSTLDNLGSDGWLKTEL | 427 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sebi54g00076 | 427 | MobiDBLite | consensus disorder prediction | 240 | 255 | - | - | |
| Sebi54g00076 | 427 | MobiDBLite | consensus disorder prediction | 154 | 173 | - | - | |
| Sebi54g00076 | 427 | MobiDBLite | consensus disorder prediction | 206 | 227 | - | - | |
| Sebi54g00076 | 427 | Pfam | Helix-loop-helix DNA-binding domain | 271 | 319 | IPR011598 | GO:0046983 | |
| Sebi54g00076 | 427 | CDD | bHLH_AtBPE_like | 258 | 341 | - | - | |
| Sebi54g00076 | 427 | Gene3D | - | 265 | 335 | IPR036638 | GO:0046983 | |
| Sebi54g00076 | 427 | MobiDBLite | consensus disorder prediction | 154 | 255 | - | - | |
| Sebi54g00076 | 427 | SMART | finulus | 274 | 324 | IPR011598 | GO:0046983 | |
| Sebi54g00076 | 427 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 164 | 377 | IPR024097 | GO:0006355 | |
| Sebi54g00076 | 427 | FunFam | Basic helix-loop-helix transcription factor | 265 | 335 | - | - | |
| Sebi54g00076 | 427 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 266 | 326 | IPR036638 | GO:0046983 | |
| Sebi54g00076 | 427 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 268 | 318 | IPR011598 | GO:0046983 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Sebi54g00076 | Sebi-Chr54 | 1367844 | 1370462 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Sebi54g00076 | 10 | 427 | Basic Helix-Loop-Helix Transcription Factor Gene Family | AT1G10120 | 37.882 | 5.44e-64 | 208 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | bHLH | Sebi54g00076 | HLH | 4.5e-06 | No_clan |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sebi54g00076 | - | - | gmx:100801930 | 532.332 |