Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi54g00069 ATGGGAAGAGCACCTTGCTGTGACAAAGCAAACGTGAAGAAAGGTCCTTGGTCACCAGAAGAAGATTCCAAACTCAAATCCTACATCGAACAGCACGGAACCGGTGGTCTTAAGCGATGTGGCAAGAGTTGCCGCCTTCGGTGGCTAAACTATCTTCGCCCTAATATCAAGCATGGAGGTTTCTCAGAAGAAGAAGACAACATTATTTGCAGCCTTTACGTTAGTATTGGAAGCAGATGGTCGGTTATTGCAGCACAATTGCCAGGGAGAACTGATAATGATATAAAGAATTACTGGAACACAAGGCTGAAGAAGAAGCTTTTAGGGAAGCACCGTAAGGAACAACAAGCACAGAATATTATTAGTCAACAACAACAACAAGAGACGTATTGGCCTCAGATGCCTGTGGTGCCGCCTTTGGCTTATACAACAAACCAATTAGCACTTCCTCCTCCTCCGAGTTTCAACGACCAAGATTGTATTAGGAAATTGTTAATCAAGCTTGGAGGAAGATTCTCTGATGATAATTATTATCAGCCTATCCTTGATGGTTTGAACAATAATCTTCAATTCCATGATGGTCATGATCTTCTTCCCTCAACACAACAAATTGATCATCATCATTATGATATTGGATCTTCTGGCAACAACAACCAAGTACAATTCTCTCAGACTCATGATCAGTATTGTGCTGCTGTTGAAGGGCAAGAGAAACTGAAGGACATGATTAGTGATAATAAGATTACAGGTACAAGCACTAGTCCTATTGTGGCCAAAGTGGTGCTAACTGGGGTGAGAGCAGTGCTCTGA 810 0.421 MGRAPCCDKANVKKGPWSPEEDSKLKSYIEQHGTGGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYVSIGSRWSVIAAQLPGRTDNDIKNYWNTRLKKKLLGKHRKEQQAQNIISQQQQQETYWPQMPVVPPLAYTTNQLALPPPPSFNDQDCIRKLLIKLGGRFSDDNYYQPILDGLNNNLQFHDGHDLLPSTQQIDHHHYDIGSSGNNNQVQFSQTHDQYCAAVEGQEKLKDMISDNKITGTSTSPIVAKVVLTGVRAVL 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi54g00069 269 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 52 IPR017930 -
Sebi54g00069 269 SMART sant 57 105 IPR001005 -
Sebi54g00069 269 SMART sant 13 54 IPR001005 -
Sebi54g00069 269 Pfam Myb-like DNA-binding domain 59 101 IPR001005 -
Sebi54g00069 269 Pfam Myb-like DNA-binding domain 14 52 IPR001005 -
Sebi54g00069 269 ProSiteProfiles Myb-like domain profile. 9 103 IPR001005 -
Sebi54g00069 269 CDD SANT 16 103 IPR001005 -
Sebi54g00069 269 FunFam Transcription factor RAX3 60 133 - -
Sebi54g00069 269 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 53 107 IPR017930 -
Sebi54g00069 269 Gene3D - 7 58 - -
Sebi54g00069 269 SUPERFAMILY Homeodomain-like 11 99 IPR009057 -
Sebi54g00069 269 PANTHER OS09G0431300 PROTEIN 1 233 - -
Sebi54g00069 269 Gene3D - 60 131 - -
Sebi54g00069 269 FunFam Transcription factor RAX3 7 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi54g00069 Sebi-Chr54 1184996 1186156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi54g00069 1 116 MYB Transcription Factor Family AT3G49690 83.333 2.89e-73 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sebi54g00069 Myb_DNA-binding 4.2e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi54g00069 K09422 - gmx:778079 321.627