Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi54g00065 ATGGAGGAATACACTAATAACAATCACTTAAGTCCAACTCCAACGGCAAATTTGTTATACTCTTCCGCTGGTGGTTCAAGCATAGGAAACCGCCATCTTCATGTTCCCATCAACACCTTTCATCTTCAATCCGGTTCTGGATCGGATCACTGCTTTCAATTCTCAGTGAAAACCGAGTCCAACAGCAATAACTCACCGATTTTCCACCATCCTTTAATGAGAGGAAATCTTCATCACCACGCGCTGCAAGAAGGAGGAAACCAACAGAGCTCTAATGAAGTTGAAGCCATAAAAGCCAAAATTATTGCTCATCCTCAATACTCCAATCTTTTACAAGTTTACATGGATTGCCAAAAGGTTGGAGCGCCGCCTGAAGTGGCGGCGCGTTTGGCTGAGGTTGGACAGGATTTTGAAGCGCGGCAGCGATCTACGGTTAGTTCAAGGGAAAGTAGCAAGGATCCAGAGCTTGACCAATTTATGGAAGCTTATTATGACATGCTTGTGAAGTACCGTGAGGAATTAACAAGGCCTATACATGAGGCCATGGATTTCATGCGGAGGATAGAAACTCAACTCAACATGCTTTGCAATAATGGACCCCTTCGGATCTTCTCTGATGATAAATGTGATGGCGTTGGTTCATCAGAAGAAGATCAAGAGAACAGTGGTGGAGAAACAGAACCGCTTGAGATTGATCCACGAGCTGAAGACCGTGAACTAAAAAACCACTTGCTCAAGAAATATAGCGGTTACTTAAGTAGCCTAAAGCAAGAGCTTTCAAAGAAAAAGAAAAAAGGAAAACTACCTAAAGATGCTAGACAAAAGCTTCTTAGCTGGTGGGAATTACATTACAAATGGCCATATCCTTCGGAATCAGAAAAGGTGGCGTTGGCTGAATCAACCGGTTTAGACCAGAAGCAAATAAATAACTGGTTCATAAATCAAAGGAAGAGGCACTGGAAACCATCTGAAGATATGCAACTTATGGTGATGGATGGCCTGCATCCACATAACGCATCTCTCTACATGGATGGCCATTACATGACTGATGGTCATTACCGATTTGGGCCATAA 1074 0.4302 MEEYTNNNHLSPTPTANLLYSSAGGSSIGNRHLHVPINTFHLQSGSGSDHCFQFSVKTESNSNNSPIFHHPLMRGNLHHHALQEGGNQQSSNEVEAIKAKIIAHPQYSNLLQVYMDCQKVGAPPEVAARLAEVGQDFEARQRSTVSSRESSKDPELDQFMEAYYDMLVKYREELTRPIHEAMDFMRRIETQLNMLCNNGPLRIFSDDKCDGVGSSEEDQENSGGETEPLEIDPRAEDRELKNHLLKKYSGYLSSLKQELSKKKKKGKLPKDARQKLLSWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQLMVMDGLHPHNASLYMDGHYMTDGHYRFGP 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi54g00065 357 FunFam Homeobox protein knotted-1-like 2 264 326 - -
Sebi54g00065 357 Pfam Homeobox KN domain 279 318 IPR008422 GO:0003677|GO:0006355
Sebi54g00065 357 CDD homeodomain 271 323 IPR001356 GO:0003677
Sebi54g00065 357 ProSiteProfiles 'Homeobox' domain profile. 259 322 IPR001356 GO:0003677
Sebi54g00065 357 Gene3D - 264 326 - -
Sebi54g00065 357 SMART ELK_2 239 260 IPR005539 GO:0003677
Sebi54g00065 357 SUPERFAMILY Homeodomain-like 260 335 IPR009057 -
Sebi54g00065 357 ProSitePatterns 'Homeobox' domain signature. 297 320 IPR017970 GO:0000981|GO:0006355
Sebi54g00065 357 Pfam KNOX2 domain 151 196 IPR005541 GO:0003677|GO:0005634
Sebi54g00065 357 Pfam KNOX1 domain 96 138 IPR005540 GO:0003677|GO:0005634
Sebi54g00065 357 MobiDBLite consensus disorder prediction 207 235 - -
Sebi54g00065 357 ProSiteProfiles ELK domain profile. 239 259 IPR005539 GO:0003677
Sebi54g00065 357 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 83 327 - -
Sebi54g00065 357 SMART KNOX2_2 146 197 IPR005541 GO:0003677|GO:0005634
Sebi54g00065 357 Pfam ELK domain 239 260 IPR005539 GO:0003677
Sebi54g00065 357 SMART KNOX1_2 95 139 IPR005540 GO:0003677|GO:0005634
Sebi54g00065 357 SMART HOX_1 261 326 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi54g00065 Sebi-Chr54 1092077 1096266 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi54g00065 55 357 Homeobox Transcription Factor Family AT4G08150 73.377 1.68e-147 420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Sebi54g00065 KNOX2 7.3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi54g00065 - - gmx:100807602 561.222