Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi54g00042 ATGGACAATGATATGTACATTTCTCCTCTGGACATTTCTGGCCGAGATTCTACTGTAGTAGATGAAATTTCACAACATTCCACCTCAAATCCACTCATTCAGTGCTATTCATTTGACCTTAATGACCAATCCCATCTTATAAATGGAATTTCAATGCTTGCTGGAGAGCAAGGTGAACCTATAAGCAATGTCCAAGCTGATGTTTGCTTCACAAATCCTACAAGTATTGCTGACTCTAGTTCATTAGTTACATCACAAGGAAAGACAATTGTGGAAGATGCCTCAAATTCAATGGAGAACAGTGAGTTTCAAGAGTATTTAGTTGGAGGAATGCCATTCACTCCTGCTTCACTTGCAGCCATTCTTGCTGCTAGAATTGGTCTTGAAGAAAATTTAGAGAATTCAGCAGCTTTGCCTCCTTCACTCTGCTCCATGGGGGCACTGGAGCCATTCTTCAATAATTGGCAAGGCACATCAAACCCTTTATCTGTAAACTTTGAGGACCATAGTTACAATGAAGTACCTGGGAATGTCAACAAGTTTCCTAAAGCTCCAGAGCTTTATGAAACTGGGTGCCAGCCTTATTCTTCCATAGGAAACCTGGATCCAGATGGATGGACAGAACCAAATGTAGCAAACATGACCAATCATTCTTACCATTCTTCTAAATATAGTAATGAACTTTCTCTAAGTCTTGCAACATCTACAAGCCCAGGACAGTGCTCAGAGGTCAGTTGCTCTGATGTGACCCAATGCATGAATGGAACCATGTCAGGCTTGGAGCAAGCCTCTTGCAGCAGTACTAGGGAACTTTCTATGAGTTTGGGTTGTAACAAATATGTCCAGTTTTCACCAGAAGTATTGAGATCAAGATATCTTGTTGGAATTCAAGACATACTCGCTCAAATTGCAAGATATTCATTTGATAATCTGGAACAGATAAATTGTTCAGCTGCTGGCAATAGAAATAAATCAACCCCTGCTTTCCCACACAAGAGAAGGATACTGGTAAATCACAATGCAGATCCTATGTATGAAGCTCATGCAGAATCTCAATTGCAAAGGCATGCAGCTGAATCAACGAAATCCCAACTGCTGACACTTCTACAACTGGTGGACAATCGATATAGCCAGTGTTTGGATGAGATACATACTGTTGTATCCGCATTCCATGCTGCTACAGAGCTGGACCCACAAATACATGCACAATTTGCTCTCCAAACAATTTCTGTTCTATACAAGGACTTGCGAGAGAGGATTAGCAATCATATTCTTGCCATGGGACCAAATTTTAACAACTTTTGCTCAGAAGAGAAAGAATGGTCTGTCGAAACATCATTCCTTCAAAAGCAATGGGCTCTCCAACAGTTGAAAAGAAAAGATCATCAATTATGGAGGCCCCAAAGAGGCTTGCCAGAAAGATCTGTCTCAGTTTTAAGAACTTGGATGTTTCAGAATTTCCTTCATCCGTATCCTAAAGATGCAGAGAAGCATTTGCTTGCAGTAAAAAGTGGGTTGACGAGAAGCCAGGTATCCAATTGGTTTATAAATGCTCGTGTTCGGCTGTGGAAACCTATGATTGAGGAAATGTATAGTGAAATGAATAAAAGAAAGGCATGTCGAAATGAAGAAGGAATGGAGAACAGCCAAGGAAACAGAATCTGTGCTATGAGGATGTTGAACAACATAGAATCAACACAGCATTAA 1707 0.4048 MDNDMYISPLDISGRDSTVVDEISQHSTSNPLIQCYSFDLNDQSHLINGISMLAGEQGEPISNVQADVCFTNPTSIADSSSLVTSQGKTIVEDASNSMENSEFQEYLVGGMPFTPASLAAILAARIGLEENLENSAALPPSLCSMGALEPFFNNWQGTSNPLSVNFEDHSYNEVPGNVNKFPKAPELYETGCQPYSSIGNLDPDGWTEPNVANMTNHSYHSSKYSNELSLSLATSTSPGQCSEVSCSDVTQCMNGTMSGLEQASCSSTRELSMSLGCNKYVQFSPEVLRSRYLVGIQDILAQIARYSFDNLEQINCSAAGNRNKSTPAFPHKRRILVNHNADPMYEAHAESQLQRHAAESTKSQLLTLLQLVDNRYSQCLDEIHTVVSAFHAATELDPQIHAQFALQTISVLYKDLRERISNHILAMGPNFNNFCSEEKEWSVETSFLQKQWALQQLKRKDHQLWRPQRGLPERSVSVLRTWMFQNFLHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVRLWKPMIEEMYSEMNKRKACRNEEGMENSQGNRICAMRMLNNIESTQH 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi54g00042 568 Gene3D - 468 547 - -
Sebi54g00042 568 Pfam Associated with HOX 287 421 IPR006563 -
Sebi54g00042 568 CDD homeodomain 465 526 IPR001356 GO:0003677
Sebi54g00042 568 SMART HOX_1 465 529 IPR001356 GO:0003677
Sebi54g00042 568 Pfam Homeobox KN domain 482 521 IPR008422 GO:0003677|GO:0006355
Sebi54g00042 568 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 221 549 - -
Sebi54g00042 568 SUPERFAMILY Homeodomain-like 467 534 IPR009057 -
Sebi54g00042 568 SMART prehox3 281 422 IPR006563 -
Sebi54g00042 568 ProSiteProfiles 'Homeobox' domain profile. 462 525 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi54g00042 Sebi-Chr54 662282 664459 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi54g00042 221 538 Homeobox Transcription Factor Family AT4G32980 55.346 1.02e-106 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Sebi54g00042 POX 9.5e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi54g00042 - - gmx:100820354 884.019