Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi54g00017 ATGCAAGGGATTAGAGTGAAAGAAGAAGAAACACTAACATGTGCAGTTACTGGTTCTGCTTCAACATCATGTTCATCTTCATCTTCAAGCTCAAGCCTCTCTCCACAACCCATGGAAGGTCTTCACGAGATGGGTCCACCTCCATTTCTCACCAAGACCTTTGATGTAGTGGAAGATCCATCCACCGACTCCATTGTTTCATGGAGCAGAGCTCGCAACAGTTTCGTCGTTTGGATTCTCACAAATTCTCCACTGCCATTCTACCTCGTTACTTCAAGCACAGCAATTTCTCCAGCTTCGTTCGCACAGCTCAATACCTATGGTTTTAGGAAAGTTGATCCAGATCGATGGGAATTTGCAAATGAAGGGTTTTTGGCAGGACAGAGACAGTTGTTGAAGACCATCAAGAGAAAGAAGAAACGTGACACAGTCACAGGCTATGCCGCAGCAAGGTTGAGGAGAGACAGGACAGTGTTAATGGCAGAGATTGTGAGGCTGAGGCAGCAACAGAACAATTCAAGGGAGCAATTGTCTTCCATGGAGGCTAGGTTGCTTACCACTGAGAAGAAACATCAACAGATGATGACTTTTCTTGCTAAAGCACTCAGTAATCAAACTTTATGCAACAATTGGCACAGAGGAATGCAAGATCCTTTATCCATGGCAGTGCCAATTGATTCAGTTGTGGACTATCCAAGTGAAGAACAGGAAGGATTGACAAATATTGAGTCTGAGATGGAGACACTTCTCTCAACTGCTTATGATAATGAATCAAGCAGTGAAATCAAAGACCCAGCATCAAGTTCAGTTCCAATTGCTAGTGAGAGTAATTTGGGGTTAGTCAATGAGGCAATATGGGAGGATTTGCTGAATCAAGACTTGGTTGCTGGGAATCCAGATGATGAAGTTGTGATTGGTGATCTTTCTCAAGTTGATGTCCCGGTGGAGGATTTGGTAGCAGAACCAGATGATTGGACTGAGGACTTGCAGACCCTGTTGGATCATATGGGTTATCTTGGATCCAAATCATAG 1032 0.439 MQGIRVKEEETLTCAVTGSASTSCSSSSSSSSLSPQPMEGLHEMGPPPFLTKTFDVVEDPSTDSIVSWSRARNSFVVWILTNSPLPFYLVTSSTAISPASFAQLNTYGFRKVDPDRWEFANEGFLAGQRQLLKTIKRKKKRDTVTGYAAARLRRDRTVLMAEIVRLRQQQNNSREQLSSMEARLLTTEKKHQQMMTFLAKALSNQTLCNNWHRGMQDPLSMAVPIDSVVDYPSEEQEGLTNIESEMETLLSTAYDNESSSEIKDPASSSVPIASESNLGLVNEAIWEDLLNQDLVAGNPDDEVVIGDLSQVDVPVEDLVAEPDDWTEDLQTLLDHMGYLGSKS 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi54g00017 343 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 35 241 IPR027725 -
Sebi54g00017 343 FunFam Heat stress transcription factor B-4 41 139 - -
Sebi54g00017 343 Coils Coil 149 183 - -
Sebi54g00017 343 Gene3D - 42 140 IPR036388 -
Sebi54g00017 343 PRINTS Heat shock factor (HSF) domain signature 49 72 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi54g00017 343 PRINTS Heat shock factor (HSF) domain signature 100 112 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi54g00017 343 Pfam HSF-type DNA-binding 49 138 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi54g00017 343 SMART hsfneu3 45 138 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi54g00017 343 MobiDBLite consensus disorder prediction 19 37 - -
Sebi54g00017 343 SUPERFAMILY "Winged helix" DNA-binding domain 45 138 IPR036390 -
Sebi54g00017 343 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
Sebi54g00017 343 MobiDBLite consensus disorder prediction 19 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi54g00017 Sebi-Chr54 254522 255813 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi54g00017 35 342 HSF AT2G26150 41.691 2.79e-77 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Sebi54g00017 HSF_DNA-bind 3.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi54g00017 K09419 - gmx:100794605 379.793