Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi549g00063 ATGAACAACAATTATAGTGATAGAGGCAATGATAGTTCTGATGAAAGTCATAGTGAAGATAACAATGATGTGGGTAATCAGAATGAGGCAGTGGACGAAGATTTAACATATGAACAGTATAAAAGTATAATAGACCTAACTGCGAATGACGTTCGAGGTATGGAGTTTGGTAGTGACGAGCATGCATGTAAATTTTATGATTCATATGCTAGGTGTCATGGCTTTGTTGCAAGAAAAGATGATATAAAACGTGATGCGAAAGACAATATTATAATGCGTCAATTGGTTTGCAACAAAGAGGGGTTGAGAAATAAAAAGCACTTTATAAGGTTGGATAGAAAGAGACCTCATAGGCCAATCACTCGTACTAGTTGTCAAGCTAAGCTTAGAGTACACTTTGATTACAAGAGATCAAAATGGACAGTCTTGTCCTTTGTGGAGACTCATAATCATTATTTATGTCCACCAAAATATAGACACTTAATCCCTGCACATCGCAAGATGGGTGATACAGATAAAGCTCAAGCGGAAAGTTTGCATTCCTATGGAGTTAGGACTTGTCACATTATGGGATATATGTTGGCTCAGAAAGGTGGGTATAGTGCTTTAGGGTTTACCAAAAAGGATATGTACAATTATTTTAGTGAGAAAAACCGTGAGAAGATCAAAGATGGGGATGCATGCATTGCATTAAGTTATTTACAAGGCAAGGCAGATAATAATGGATTGATGCATTCATCATATTCATTTACAAGTGATGAAAACAAGTGGGTTTCTAAAACCTATGAGAACAAGTATATGTGGGCTAGTGCATACTTGCGTGATAAGTTCTTTGGTCGTATAAGGACAACTTCACAATGTGAAGCCATTAATTCTCTTGTCAAGTCATATGCTAATAACAAATGTAGCATTATTGACTTCATGCATAAATTTGAGCAAGTGATTGAGCGTGATGCTTCAAAAATTTTCACCCAAGAGATTTTTAAGGATGTTAAATCTGAAATTGAAGCTGCTGGTGCCTTGAATGTTATTGAACGTGTGATAAATGGTGAGAAATTAATATTGAAGATGAACAAATATTGTGATATTGGAAGTGAATTTGTTGTTGATTATGATACTGTGAACTGTAATTTTTTCTGTGAATGCAAACTATTTGAATCTCGTGGCATTCCATGTGCTCATATTATATGTGCCATGAAAAATGAGCACATAGACTCCATTCCTAGCAGTTTGATATGCAAACGGTGGACAAAAACTGCAAAGAGTGATATTATTTCTGCAAGTCGATTGGATGATTTAGATTCTGATGTCATGTCTGGGGCCCGTGTTGGGGCTGCAGCTGCTGCTTGGGATCCAAACAACACAGTTAGGTCATCTTTTAAGGATGTGGGTGATCCATATTTAGTGAAAACAAAAGGTGCTCCATCCAAGAAAAAGTACGGAAGGAAGAGGAGATGTTCAAATTGTAGTAGACCTGGACACATAGCTAGGAAATGTCCTAGGCTCCTTTCCACGGATGATCAAGTTCCTATGGATGGTGATTCTTCACATTCAGATGGTGATGGTTTCACAATAGGAGAAGAAAATGATAAAGAAGGAAATCCCGTTGATCAATGTGATGACCAGCAAATTGGGTCTAAAAATCAGTCAAGAATGAGGAAAGATAATAATGTAAAAGGGAAAGGTACTGGTTCTTTCAAAATGAAGGAGAAAACGGTAAATCGGTCAACACATAATTCAGTGAAGCAGCCTAAAATTGAACCTATGGTTTCTTCAAGTGATGCTAATGCTGACAATCCCCTAACACCAAAATTCAAACCCTGTTTATGCAACAACCAGCGAAGGAGTTAA 1851 0.3712 MNNNYSDRGNDSSDESHSEDNNDVGNQNEAVDEDLTYEQYKSIIDLTANDVRGMEFGSDEHACKFYDSYARCHGFVARKDDIKRDAKDNIIMRQLVCNKEGLRNKKHFIRLDRKRPHRPITRTSCQAKLRVHFDYKRSKWTVLSFVETHNHYLCPPKYRHLIPAHRKMGDTDKAQAESLHSYGVRTCHIMGYMLAQKGGYSALGFTKKDMYNYFSEKNREKIKDGDACIALSYLQGKADNNGLMHSSYSFTSDENKWVSKTYENKYMWASAYLRDKFFGRIRTTSQCEAINSLVKSYANNKCSIIDFMHKFEQVIERDASKIFTQEIFKDVKSEIEAAGALNVIERVINGEKLILKMNKYCDIGSEFVVDYDTVNCNFFCECKLFESRGIPCAHIICAMKNEHIDSIPSSLICKRWTKTAKSDIISASRLDDLDSDVMSGARVGAAAAAWDPNNTVRSSFKDVGDPYLVKTKGAPSKKKYGRKRRCSNCSRPGHIARKCPRLLSTDDQVPMDGDSSHSDGDGFTIGEENDKEGNPVDQCDDQQIGSKNQSRMRKDNNVKGKGTGSFKMKEKTVNRSTHNSVKQPKIEPMVSSSDANADNPLTPKFKPCLCNNQRRS 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi549g00063 616 PANTHER OS01G0519700 PROTEIN 253 426 - -
Sebi549g00063 616 MobiDBLite consensus disorder prediction 475 491 - -
Sebi549g00063 616 MobiDBLite consensus disorder prediction 577 599 - -
Sebi549g00063 616 ProSiteProfiles Zinc finger SWIM-type profile. 367 403 IPR007527 GO:0008270
Sebi549g00063 616 MobiDBLite consensus disorder prediction 1 32 - -
Sebi549g00063 616 ProSiteProfiles Zinc finger CCHC-type profile. 484 501 IPR001878 GO:0003676|GO:0008270
Sebi549g00063 616 MobiDBLite consensus disorder prediction 552 576 - -
Sebi549g00063 616 SMART 26again6 378 405 IPR006564 GO:0008270
Sebi549g00063 616 Pfam FAR1 DNA-binding domain 64 154 IPR004330 -
Sebi549g00063 616 SUPERFAMILY Retrovirus zinc finger-like domains 476 505 IPR036875 GO:0003676|GO:0008270
Sebi549g00063 616 Gene3D - 469 540 - -
Sebi549g00063 616 SMART c2hcfinal6 485 501 IPR001878 GO:0003676|GO:0008270
Sebi549g00063 616 Pfam Zinc knuckle 485 500 IPR001878 GO:0003676|GO:0008270
Sebi549g00063 616 MobiDBLite consensus disorder prediction 471 616 - -
Sebi549g00063 616 MobiDBLite consensus disorder prediction 521 537 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi549g00063 Sebi-Chr549 696527 699287 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Sebi549g00063 FAR1 2.5e-20 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi549g00063 - - ccaj:109792835 281.952