Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi549g00057 ATGGCAGAAGCTTTAAATCTTAAGCCCAAAAAGGGACTAGGATCTCTGTTTTCTTCCTCTGCTTCTGCCCAAGGTGACTTGAGACATTTGGACCTGGAAAAAGAGAAAGATGATGAGACAACTCCAAGAGGGGTTTTAGAGGCCTGTGTTAGAGAATTTGACTCTCATAAGCCACCTGAATCAGAAACTAGTAGTTCAAGTTCCAGTACACGGTCTCACTGGAGCAAGTTTTTCAAATTGTGGAAAAAAAGTTCATTTAAGCGCCTAGCTTCCATCCCTGCTAGTATCAGTGTGCCAAAGATACCAAAGTGGAAAAGCAGAAGCACTAGAGAAAATCCTGCAAGAAGTAAACTATACAACTTCAGGTGTTCTTTGGTGACTTTTAGCCTCTCTGACCTTAGAAATGCAACCAACAATTTCAGCAAAGAAAATTTAATTGGAAGAGGTGGTTTTGCTGAGGTTTACAAGGGTGTTCTCCAAGATGGGCAATTAATAGCTGTGAAGAAAATGACTAAAGGGACCACAGATGAGAAGACAGCAGGATTTCTATCTGAGCTAGGTGTTAGTGCTCATGTTGACCATCCTAATACTGCCAAAATTATTGGATGTGGTGTAGAAGGAGAAATGCACCTTGTCTTTGAACTATCTCCACTGGGAAGTTTAGGGTCTCTTCTTCATGGTTTGTTTGCACTTGATTTGGAGTCTTATGACTATGCTTTATCTTTGAGAGTTCCTTGGACAATAATTTGTGATTTTGGGCTAGCAAAGTGGTTACCAGAACAATGGACTCACCATAATGTGTCAAAATTTGAAGGCACATTTGGGTACTTTGCTCCTGAATATTGCATGCATGGTATAGTAGATGAGAAAACTGATGTTTATTCCTTTGGAGTCCTACTTTTGGAGATCATAACTGGGCGTCCTGCTTTGAGTAATTTGCAGCAGAGTGTTGTGATATGGGCAAAACCTTTGCTTGACACTCATAATATCAAGGACCTTGTTGATCCTTCTCTTGGTGATGATTATGACCGAGAACAGATGCGTCATGTTGTTTTGACTGCATCACTGTGTGTTGAACAGTCTCCTATCTCACGCCCCCGCATGAGTCAGGCAAGTAGACAATCAGCTACATAG 1134 0.4118 MAEALNLKPKKGLGSLFSSSASAQGDLRHLDLEKEKDDETTPRGVLEACVREFDSHKPPESETSSSSSSTRSHWSKFFKLWKKSSFKRLASIPASISVPKIPKWKSRSTRENPARSKLYNFRCSLVTFSLSDLRNATNNFSKENLIGRGGFAEVYKGVLQDGQLIAVKKMTKGTTDEKTAGFLSELGVSAHVDHPNTAKIIGCGVEGEMHLVFELSPLGSLGSLLHGLFALDLESYDYALSLRVPWTIICDFGLAKWLPEQWTHHNVSKFEGTFGYFAPEYCMHGIVDEKTDVYSFGVLLLEIITGRPALSNLQQSVVIWAKPLLDTHNIKDLVDPSLGDDYDREQMRHVVLTASLCVEQSPISRPRMSQASRQSAT 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi549g00057 377 Gene3D Transferase(Phosphotransferase) domain 1 233 377 - -
Sebi549g00057 377 MobiDBLite consensus disorder prediction 51 70 - -
Sebi549g00057 377 MobiDBLite consensus disorder prediction 27 45 - -
Sebi549g00057 377 ProSiteProfiles Protein kinase domain profile. 140 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi549g00057 377 PANTHER OS08G0249100 PROTEIN 249 371 IPR046958 -
Sebi549g00057 377 Pfam Protein tyrosine and serine/threonine kinase 143 226 IPR001245 GO:0004672|GO:0006468
Sebi549g00057 377 Gene3D Phosphorylase Kinase; domain 1 101 214 - -
Sebi549g00057 377 ProSitePatterns Protein kinases ATP-binding region signature. 146 169 IPR017441 GO:0005524
Sebi549g00057 377 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK1 116 215 - -
Sebi549g00057 377 SUPERFAMILY Protein kinase-like (PK-like) 122 373 IPR011009 -
Sebi549g00057 377 MobiDBLite consensus disorder prediction 1 45 - -
Sebi549g00057 377 Pfam Protein kinase domain 249 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi549g00057 Sebi-Chr549 608767 611258 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi549g00057 104 373 Receptor kinase-like Gene Family AT1G53420 33.654 2.05e-45 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Sebi549g00057 Pkinase 2.2e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi549g00057 - - gmx:100781529 498.819