Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi549g00047 ATGACTCACATTGCTGTGGAGAGAAATAGAAGAAAACAGATGAATGAGTATCTTTCTGTTCTTCGGACTCTAATGCCAGACTCTTATATCCAAAGGGGTGATCAAGCTTCTATAATTGGAGGGGCTATTAAACTTTGTTTAAAGAGCTTGAGCAGAGGCTGCACTTTCTTGTATTCAACAAATGCTAGTAGCAGTGATAATTCTGGAGCCATTGGTGAACATGTAGGTGGGGTTCAATCTGGCATTGCTGATATAGAAGTGACAATGGTGGAAAGCCATGCAAATCTCAAAATAAGATCTAAGAAGAGGCCAAAACAGCTCTTGAAAATGGTCACTGGTTTGCATAGCATGCGCCTCACAATTTTGCACCTAAATGTTACCACCACTGGTGAAACTGTCCTCTACTCTCTCAGTGTTAAGGTAGAAGATGATTGCAAGTTGGGATCAGTGGATGATATATCTGCAGCTGTGTACCAGATGCTGGATAGGATTCAACAAGAGGCAAGCTGA 510 0.4157 MTHIAVERNRRKQMNEYLSVLRTLMPDSYIQRGDQASIIGGAIKLCLKSLSRGCTFLYSTNASSSDNSGAIGEHVGGVQSGIADIEVTMVESHANLKIRSKKRPKQLLKMVTGLHSMRLTILHLNVTTTGETVLYSLSVKVEDDCKLGSVDDISAAVYQMLDRIQQEAS 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi549g00047 169 PANTHER MAX DIMERIZATION, MAD 1 44 - -
Sebi549g00047 169 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 49 IPR011598 GO:0046983
Sebi549g00047 169 Gene3D - 1 54 IPR036638 GO:0046983
Sebi549g00047 169 SMART finulus 4 55 IPR011598 GO:0046983
Sebi549g00047 169 Pfam Helix-loop-helix DNA-binding domain 2 44 IPR011598 GO:0046983
Sebi549g00047 169 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 1 45 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi549g00047 Sebi-Chr549 543572 544427 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi549g00047 1 141 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 52.695 8.86e-50 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi549g00047 HLH 1.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi549g00047 - - lja:Lj5g3v1452280.1 260.766