Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi549g00046 ATGAAAGACATGAAAGCAGGAGTTGATCCATCTGTGCAAGATTCACAAAATGGGAGGACAACTTTGCATACAGCTGCTATGACTAACGATGTGGGCCTGGTTAAGGTTATTCTTGCTACTGGTGTTGATGTGAACATTCGGAACGTACACAACAGTATACCTCTTCACTTGAACTGA 177 0.4237 MKDMKAGVDPSVQDSQNGRTTLHTAAMTNDVGLVKVILATGVDVNIRNVHNSIPLHLN 58
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi549g00046 58 PANTHER E3 UBIQUITIN-PROTEIN LIGASE KEG 5 58 IPR044584 GO:0004842|GO:0006952|GO:0009738|GO:0016567
Sebi549g00046 58 ProSiteProfiles Ankyrin repeat profile. 17 49 IPR002110 GO:0005515
Sebi549g00046 58 SMART ANK_2a 17 46 IPR002110 GO:0005515
Sebi549g00046 58 SUPERFAMILY Ankyrin repeat 5 57 IPR036770 -
Sebi549g00046 58 Gene3D - 4 58 IPR036770 -
Sebi549g00046 58 ProSiteProfiles Ankyrin repeat region circular profile. 17 48 - -
Sebi549g00046 58 Pfam Ankyrin repeats (many copies) 7 57 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi549g00046 Sebi-Chr549 513070 513620 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi549g00046 4 55 Ion Channels AT4G32500 42.308 1.47e-06 41.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi549g00046 K16279 - gmx:100777576 95.1301