Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi549g00044 ATGAACAACCCACACACCTTCTACCTAAATGGCGGGACAATCCCCCTTTGTTTCCTCCTCCTCCTTCTCTCCCATGGCTTCCCCTTCGCCGGAGCACAAACTACGAACACCCAAGACGATTCGTATTACAACCGCGTCAGCCCCTCCATGGCCATCATAATCGTCATACTCATCGCCGCTCTCTTCCTCATGGGCTTCTTCTCCATCTACATCCGCCGCTGCGCCGATTCCCCCTCCAGCAGTGTCCGCTACATCACCGGCGCCGCCGGACGCTCCCGCCGGGCACAGCGAGGCCTCGACCGCGCCGTCATCGACACGTTCCCCACTTTCGAATATTCCGCAGTGAAGATTCACAAGATTGGAAAAGGCGCTCTGGAATGCGCGGTGTGTTTAAACGAATTCGAGGAGACCGAAACGCTGCGTTTGATCCCAAAGTGTGACCACGTGTTCCATCCAGAGTGCATCGACGAGTGGCTTGCTTCCCACACCACTTGCCCCGTTTGCCGAGCCAACCTCGTTCCCCAACCTGGCGATTCAGTTCACGGAATCCCGATTCTGAACGACGATCCGCAAGAAGATATTGAGGCACAGAACGACGCCGTTGAACCGGCTCAGGAGCAGCAAAATGCGGACGCTGCTGCTCGAGACTCGAAGGAACCGGAATTGATGAGCTTCAACATGACGCTGAACCGGAACCGCACGAAGGGATCGCGGTCGAGCCGGACGCGAAGGTTCCCGCGGTCTCACTCGACCGGTCATTCGTTGGTCCAACCGGGTGAGGACACTGAACGGTTCACTTTGAGACTTCCCGTGGAAGTGAGGAAGCAGATACTACTGAACCCGGAATTGCATCGGGCTAGAAGCTTGGTTGTGTTGCCTAGAGAAAGTAGTTCACGGCGGGGATATAGAGCCGGTGGAGAGGGAAGTAGCAGAGGGAGGAATTCAAGGCGATTGGACAGGGGTTTCAAATCAGACCGGTGGGTTTTCACCATGGCGCCGCCGTTCCTAGTTAGAGCGTCGTCGATTAGGTCGCCGAGGGTAGCTAATAGCGTCGGGGAAGGCACCTCCGCTTCTACACCGCCGGCGGCGGCGGCGGTGGAAGTGAGCTCTGCGCGCCCTCCGGTTTAA 1128 0.5745 MNNPHTFYLNGGTIPLCFLLLLLSHGFPFAGAQTTNTQDDSYYNRVSPSMAIIIVILIAALFLMGFFSIYIRRCADSPSSSVRYITGAAGRSRRAQRGLDRAVIDTFPTFEYSAVKIHKIGKGALECAVCLNEFEETETLRLIPKCDHVFHPECIDEWLASHTTCPVCRANLVPQPGDSVHGIPILNDDPQEDIEAQNDAVEPAQEQQNADAAARDSKEPELMSFNMTLNRNRTKGSRSSRTRRFPRSHSTGHSLVQPGEDTERFTLRLPVEVRKQILLNPELHRARSLVVLPRESSSRRGYRAGGEGSSRGRNSRRLDRGFKSDRWVFTMAPPFLVRASSIRSPRVANSVGEGTSASTPPAAAAVEVSSARPPV 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi549g00044 375 CDD RING-H2_EL5-like 126 169 - -
Sebi549g00044 375 MobiDBLite consensus disorder prediction 293 317 - -
Sebi549g00044 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 174 IPR013083 -
Sebi549g00044 375 ProSiteProfiles Zinc finger RING-type profile. 127 169 IPR001841 -
Sebi549g00044 375 MobiDBLite consensus disorder prediction 348 375 - -
Sebi549g00044 375 PANTHER RING FINGER DOMAIN-CONTAINING 35 183 - -
Sebi549g00044 375 MobiDBLite consensus disorder prediction 198 261 - -
Sebi549g00044 375 SMART ring_2 127 168 IPR001841 -
Sebi549g00044 375 FunFam E3 ubiquitin-protein ligase ATL6 88 175 - -
Sebi549g00044 375 Pfam Ring finger domain 126 169 IPR001841 -
Sebi549g00044 375 SUPERFAMILY RING/U-box 118 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi549g00044 Sebi-Chr549 493348 494475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi549g00044 12 375 Rapid Response to Elicitors AT3G05200 43.750 1.11e-94 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi549g00044 K10664 - gmx:100810865 474.552