Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi549g00038 ATGGATCATCATGGGCATGGCCAGAATCCATCTATGGGGGTTGTTGGTAGTGGACCACAGCTGACATATGGTTCTAACCCATACCAACCAAACCATATGACTGGTTCACCTGGGATGGTTGTTTCATCAGAAATTGAGAAAGTAACTGATTTCAAGAACCACAGCCTTCCCTTGGCAAGGATCAAGAAGATTATGAAGGCTGATGAGGATGTTAGAATGATCTCAGCTGAGGCACCCGTCGTGTTTGCAAGGGCATGTGAAATGTTCATATTAGAGTTAACCTTGCGTTCTTGGAATCACACTGAAGAGAACAAAAGGAGGACACTTCAGAAAAATGATATTGCAGCAGCCATCACAAGAACTGATATCTTTGATTTCTTGGTTGACATTGTGCCTCGGGAGGACTTGAAAGATGAAGTGCTTGCATCAATACCAAGAGGAACAATGCCTGTTGCAGGGCCTGCTGATGCACTTCCTTATTGCTATATGCCACCTCAACATGCACAGCAAGTTGGAAATGCTGGTGTCATGATGCCTAAGCCTATGATGGACCCAAATATATATGCTCAGCAGCCTCATCCCTACATGGCACCACAAATGTGGCCACAACCACCAGAGCAACAACAATCATCTCCAGATCATTAG 645 0.4481 MDHHGHGQNPSMGVVGSGPQLTYGSNPYQPNHMTGSPGMVVSSEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASIPRGTMPVAGPADALPYCYMPPQHAQQVGNAGVMMPKPMMDPNIYAQQPHPYMAPQMWPQPPEQQQSSPDH 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi549g00038 214 MobiDBLite consensus disorder prediction 1 36 - -
Sebi549g00038 214 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 55 118 IPR003958 -
Sebi549g00038 214 MobiDBLite consensus disorder prediction 189 214 - -
Sebi549g00038 214 SUPERFAMILY Histone-fold 28 127 IPR009072 GO:0046982
Sebi549g00038 214 Gene3D Histone, subunit A 32 133 IPR009072 GO:0046982
Sebi549g00038 214 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 43 166 - -
Sebi549g00038 214 MobiDBLite consensus disorder prediction 13 36 - -
Sebi549g00038 214 FunFam Nuclear transcription factor Y subunit gamma 37 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi549g00038 Sebi-Chr549 435844 436626 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi549g00038 1 201 CCAAT-HAP5 Transcription Factor Family AT1G08970 58.298 1.88e-80 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Sebi549g00038 CBFD_NFYB_HMF 3.2e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi549g00038 K08066 - gmx:100527803 348.206