Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi549g00014 ATGCTGGGTTCAATAGCGGATAGAGGACAGGGGAGCAATGCAGTGGCAGCACTGACAGGACCCGTTTTTGTTCCTAAGCGGTTTGTTTGGCCTTATGGGGGAAGAAAGGTGTTTCTAATTGGTTCTTTTACCAGATGGTCAGCAGTTATACCCATGTCTCCAACCGAAGGCTCCCCGACTGTATTTCAAGCTTTGTGCAGCTTAACACCGGGATATCATCAGTACCTATTTAATGTGGATGGTCAGTGGCGGCATGATGAGCAGCAGCCATTTGTAAGTGGAAACTATGGGACAATGAATACTCTTTATGTATTAAAACAACCAGATATTTTACCTACCATCTTAAGAGCTGAAACAGCTGGTAGATCCGACATGGAAGTTGACAATAATGTCTCTGGCCATGTGGTCAATGACTTCAGTTATGATTATCATTATCCTCACTCGGTCACTCCTCAAAATGTTGCTTCATTTTCTTCCGGGAGCATACATGTGTTCATGCATACACGTGTTCATTTGTAG 519 0.4374 MLGSIADRGQGSNAVAALTGPVFVPKRFVWPYGGRKVFLIGSFTRWSAVIPMSPTEGSPTVFQALCSLTPGYHQYLFNVDGQWRHDEQQPFVSGNYGTMNTLYVLKQPDILPTILRAETAGRSDMEVDNNVSGHVVNDFSYDYHYPHSVTPQNVASFSSGSIHVFMHTRVHL 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi549g00014 172 FunFam Sucrose nonfermenting 4-like protein 21 106 - -
Sebi549g00014 172 Gene3D Immunoglobulins 24 115 IPR013783 -
Sebi549g00014 172 CDD E_set_AMPKbeta_like_N 27 100 - -
Sebi549g00014 172 PANTHER 5'-AMP-ACTIVATED PROTEIN KINASE , BETA SUBUNIT 21 104 - -
Sebi549g00014 172 Pfam Glycogen recognition site of AMP-activated protein kinase 24 109 IPR032640 -
Sebi549g00014 172 SUPERFAMILY E set domains 24 103 IPR014756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi549g00014 Sebi-Chr549 182085 184719 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi549g00014 28 114 Protein tyrosine phosphatase (PTP) family AT3G01510 31.111 3.22e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi549g00014 - - qsa:O6P43_011107 197.978