Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi549g00011 ATGTCAAACATCACTAGTTGTGATAGTGGGAGTTTCTCTACAGAGAATACCAGAGAAGATGCAGTTAAACAGCAACCTCCAGAGATACTTGGTCAGTTCCATAGTCCACATTCTCTCACTTCAACAACAATAACAACAAATAATAGCAATGGTTCCAACACAAATTTACAACCACCAGCACCTCTTAAGAAGAAAAGAAGCCTCCCAGGAAATCCAGATCCAAGTGCTGAAGTTATAGCTCTATCACCAAACACACTGTTGGCTACAAACAGGTTCGTATGTGAAATCTGCAACAAAGGATTTCAAAGAGACCAAAACCTTCAATTGCACCGGCGAGGACACAACTTGCCATGGAAGCTTAAACAGAGAACCACCACAGAAATTCGAAAGCGGGTTTATGTTTGTCCAGAACCTTCATGTGTCCACCACAACCCAGCAAGAGCACTAGGTGATCTTACTGGCATTAAAAAGCACTTTTGCAGAAAGCACGGTGAGAAGAAGTGGAAATGTGATAAATGCTCCAAGAAATACGCTGTTCAATCTGACTGGAAAGCACACTCGAAAATCTGTGGTACAAGGGAATACAAATGTGACTGTGGAACCATCTTTTCCAGAAGAGACAGCTTCATTACACACAGAGCTTTCTGTGACGCATTGGCTGAGGAGAACAACAAAGCCAATGAAGGACAATTATCAAAGATGGGTTCAAATTTGCAATGTCAACCAAATATCCCAAACCTTGTTTCCTCATTACCAATCAATAGTACCAATCCCAACCCACAAATTGGTGGGACAACAGAATTCAACCATTCTGATCACAAGCATCCATTATCACTGCCTCATGATCTCATGCCAGTGCCTCCTGCAAAACCCTTCAACAACAACAACATTCCAGGAACTGTTTTCACTCGAAGCCTCTCATCCACCTCTTCTCCCTCTCTTCAACTGAGTTCAAACATCTTCGAGGAAAACGGGCTCCATTTAGCTGCAGGGTCACCGCACATGTCAGCAACGGCATTGCTGCAAAAAGCTGCACAAATGGGTGCAACAGTGAGTAGTAGCAGTGAAAAAAGTTTTGTCACAAACATGGCACCGCCACCATTTGGTATGGTGCAACAGCAACAGCAACAGCCAAATGGGCATGCCTTCATGAACAACCACTACATGCAGAATGGCCAACAGGGTATTTCTCCTGCTCAGTTCAGTTTCAATGCAAGTGGGATTGGTGGTGCAATGAATGGTGTGGATATGTTTAATGCTATATTGGATCAGAGTAAGGCGTTATCGAAGATCATAGAGCAGAACAGTCAAAGCAATGGTGGAACTGGAGGTCCAACAATTAACATTGGTGGAAGTAAAGGAAGTGGGGATGTAATGACTTTGGATTTGTTGGGGATAGGAGGAGGTGGTGGTGGTGGGAATGTGCATGCAAATTTCTATGGTGGTACCCAACAGGGGGAAAGTGGTGCAACAGATGGGGTTTGGAGAAATTGGTCCACAAAGAATGCAGGGTTTGAATCGTTTTCAGCTACAAGTAGCATTTGA 1545 0.4369 MSNITSCDSGSFSTENTREDAVKQQPPEILGQFHSPHSLTSTTITTNNSNGSNTNLQPPAPLKKKRSLPGNPDPSAEVIALSPNTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTTTEIRKRVYVCPEPSCVHHNPARALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTIFSRRDSFITHRAFCDALAEENNKANEGQLSKMGSNLQCQPNIPNLVSSLPINSTNPNPQIGGTTEFNHSDHKHPLSLPHDLMPVPPAKPFNNNNIPGTVFTRSLSSTSSPSLQLSSNIFEENGLHLAAGSPHMSATALLQKAAQMGATVSSSSEKSFVTNMAPPPFGMVQQQQQQPNGHAFMNNHYMQNGQQGISPAQFSFNASGIGGAMNGVDMFNAILDQSKALSKIIEQNSQSNGGTGGPTINIGGSKGSGDVMTLDLLGIGGGGGGGNVHANFYGGTQQGESGATDGVWRNWSTKNAGFESFSATSSI 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi549g00011 514 FunFam protein indeterminate-domain 5, chloroplastic-like 146 225 - -
Sebi549g00011 514 MobiDBLite consensus disorder prediction 1 74 - -
Sebi549g00011 514 Gene3D Classic Zinc Finger 71 137 - -
Sebi549g00011 514 MobiDBLite consensus disorder prediction 1 20 - -
Sebi549g00011 514 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 46 478 IPR031140 -
Sebi549g00011 514 Pfam Zinc finger, C2H2 type 92 114 IPR013087 -
Sebi549g00011 514 MobiDBLite consensus disorder prediction 34 60 - -
Sebi549g00011 514 SUPERFAMILY beta-beta-alpha zinc fingers 91 188 IPR036236 -
Sebi549g00011 514 SMART c2h2final6 168 188 IPR013087 -
Sebi549g00011 514 SMART c2h2final6 133 163 IPR013087 -
Sebi549g00011 514 SMART c2h2final6 92 114 IPR013087 -
Sebi549g00011 514 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Sebi549g00011 514 Gene3D Classic Zinc Finger 147 227 - -
Sebi549g00011 514 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 114 IPR013087 -
Sebi549g00011 514 FunFam protein indeterminate-domain 12-like 71 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi549g00011 Sebi-Chr549 88717 91766 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi549g00011 49 355 IDZ Gene Family AT3G50700 56.364 1.99e-117 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi549g00011 zf-C2H2 0.0052 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi549g00011 - - gmx:100785295 782.711