Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi549g00009 ATGGTTAGTGGCTGCAGAATTGGTAATGCTGATGGTCCAGCAGAAACTGGGTTGAATGCCCTCAGCCTTTGCCAATATTCTCATAGAGAGGATAGTGATGATAATTATCTTTATTGTCCAACATCTGAAGATCTCAAAACAGATGGGATTGGCAATTTTAGAAAGCACTGGAAAAATGGTGAACCCATTATCGTTAAGCAAGTATTTGATAGGTCATCCATGTCAAGCTGGGATCCAATGGCCATATGGCGAGGGATTCGAGAGACATCAGATGAGAAAATGAAAGAAGAAAACAGAATGGTTAAGGCCATAGATTGCTTAGATGGATCCGAGATTAATATTGAGCTTGGACAGTTCATGAAAGGATACTCTGAAGGACATATTCATGAAAATGGTTGGCCACAAATATTGAAGTTGAAGGATTGGCCTTCACCTAGTGCATCTGAAGAATTTCTATTGTACCAAAGACCTGAATTTATCAGCAAAGTGCCTTTACTTCAGTATATTCACTCCAAGTGGGGCCTTCTTAATGTTGCAGCTAAATTGCCCCATTACTCCTTGCAAAATGATGTAGGACCCAAGATCTATATATCTTATGGGATTAGTGATGAACTTGGTAGAGGAGATTCAGTGACTAATCTCCACTTCAATATGCGTGATATGGTGTACCTTTTGGTCCATACAAGTGAAGCAAAGCTGAAAGACTGGCAGAGAACTAAAATTGAAATGATACAAAAAGCTCATAAGGAATCTGAGGCGAAAGAATCTCGTGGGGATCCACAAATATGTTCCGAAGGGAGTTCACCTGATTCATCACTTAATACAAAAAATAATGAACTGGATTTGGAATCAAACCAAAATGATTCGATTATGGATCAAGGGTTTAACATTTATTCTAATGCTGAAGGGAATGTGGCCAAGTGTGAACTTCCGTTTAGACAAAATGGAGATGTCTCTGAGAAAACTCATCCTGGAGTTCTTTGGGATGTCTTTCGTCGGCAGGACATTCCAAAGGTGACTGAATATTTGAAAATGCATTGGAAGGAATTAGGGAAGTCAGATGATATAGTAAATGAATTTGTTACATGGCCTCTTTATGATGGAGCTGTTTTTCTTGACAGACACCATAAAAGAATGTTGAAGGAAGAATTTGGAGTGGAGCCGTGGTCATTTGAACAGAATTTAGGGGAAGCTATATTTGTTCCTGCTGGTTGCCCTTTCCAAGCAAGGAATGTTCAGTCCACTGTTCAGTTGGGCCTTGATTTCTTATCTCCAGAAAGCCTGGGGGAGGCTGTAAGATTGGCAGGGGAAGTCCGCTGTCTACCTAATGAACATGAAGCTAAGCTTCAAGTATTGGAGGTTGGGAAGATATCTCTTTATGCAGCAAGTTCAGCCATCAAAGAAGTTCAGAAACTTGTACTTGACCCAAAACTTGGTGCAGAGATCGGATATGGAGACCCTAATTTGACTGCAATGGTTTCTGAGAATTATGAGAAGATGGTTAAGCGGAGGCAGATTACCTGTGCTTGA 1530 0.4039 MVSGCRIGNADGPAETGLNALSLCQYSHREDSDDNYLYCPTSEDLKTDGIGNFRKHWKNGEPIIVKQVFDRSSMSSWDPMAIWRGIRETSDEKMKEENRMVKAIDCLDGSEINIELGQFMKGYSEGHIHENGWPQILKLKDWPSPSASEEFLLYQRPEFISKVPLLQYIHSKWGLLNVAAKLPHYSLQNDVGPKIYISYGISDELGRGDSVTNLHFNMRDMVYLLVHTSEAKLKDWQRTKIEMIQKAHKESEAKESRGDPQICSEGSSPDSSLNTKNNELDLESNQNDSIMDQGFNIYSNAEGNVAKCELPFRQNGDVSEKTHPGVLWDVFRRQDIPKVTEYLKMHWKELGKSDDIVNEFVTWPLYDGAVFLDRHHKRMLKEEFGVEPWSFEQNLGEAIFVPAGCPFQARNVQSTVQLGLDFLSPESLGEAVRLAGEVRCLPNEHEAKLQVLEVGKISLYAASSAIKEVQKLVLDPKLGAEIGYGDPNLTAMVSENYEKMVKRRQITCA 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi549g00009 509 MobiDBLite consensus disorder prediction 261 279 - -
Sebi549g00009 509 SMART cupin_9 152 439 IPR003347 -
Sebi549g00009 509 Pfam JmjC domain, hydroxylase 372 418 IPR003347 -
Sebi549g00009 509 MobiDBLite consensus disorder prediction 247 279 - -
Sebi549g00009 509 SUPERFAMILY Clavaminate synthase-like 54 444 - -
Sebi549g00009 509 Gene3D Cupin 34 448 - -
Sebi549g00009 509 ProSiteProfiles JmjC domain profile. 171 439 IPR003347 -
Sebi549g00009 509 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 22 473 IPR045109 GO:0032454|GO:0033169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi549g00009 Sebi-Chr549 82071 86343 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Sebi549g00009 JmjC 2.4e-06 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi549g00009 K15601 - gmx:100801287 919.842