Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi549g00001 ATGAATGCGATGACGAACGACAACAACAACATATCTTCAGACCAAGTAATTGCAGAAATGCTTGAAATGGGTTTTGAGTATTCCAACATTCTTGAAGCCATCAAAGTAGTGGGTCCATCGGTTCCCAGCGCTGTGGAGCATATCTTCAATACTACTAACAACCGTGACCGTGAAACATCCAATACCCAAACCTACAAATTACGTTCACGTAATGGGAATTCTCTCAAAAAACGAACTTTTCCCTCGTCCCTTCAAGCTCCAAAGTCAAGGGTACTCAACCATTATTTCCAATCCATTGATAAAGCCACAAAGAGCAAGAACAATGACGTTGTTGCTGTTGATGTGGAAGAGCACAAGGAGCCTTCTTTACCTCAAATTGGAGTTGATCTTCCCGGTGTCGCTCAAGATTTGGATATTTCATCCGTTTGGGAGCAGAGAGTTAGCTATCTGTTGCAAAAGCATTTTGGTTTTTCATCCTTGAAAAGTTTTCAGAAGGAAGCACTCTCTACATGGGTTGCTAATAAAGACTGTCTTGTCCTGGCTGCAACAGGATCTGGGAAATCTCTGTGCTTTCAGATTCCTGCATTGTTAACTGGGAAAGTGGTGGTTGTGATTTCACCTTTGATAAGCTTGATGCATGATCAATGCTTAAAGCTTACAAGCCTTGGAATCAGTGCTTGCTTTCTTGGCTCTGGGCAACCGGATGATACTGTTGAAGAGAAAGCAATGAAAGGCATGTATAATATAATTTATGTTTGCCCAGAGACAATCAAAAGATTGATTCAATCACTGCAGAAGCTTGCAGAAAGCCGTGGCATTGCTTTATTTGCAATTGATGAGGCACATTGCATTTCTAAATGGGGTCATGATTTCCGTCCAGCCTACAGCCAACTGTCTGTGTTGAGGGAAAATTTCAGTATTGGCAAGCTAAAATCCCTGAAATTTGATATACCTCTGATGGCCTTGACAGCTACAGCTACAAAGAGAGTTCGAGAAGACATTTTAAAATCTCTATGCATGTCAAAAGAAACAAATGTTGTTCTCACATCATTTTTTCGATCTAACTTACGCTTCACGGTAAAGCATAGTAGAACATCACGGGCTTCTTATGAGAAAGATTTTCATGAATTGATTAAAGTATATGGTAGAGAGCAAAATATTGGTGGAAAAAAAGATTTCATGTCAGATGATTCAGATGATGTTTCCAATGTCTCTGATGCTAGTAGAAGTTCTGATACAGACAGTAATTCTTCTTATGATGTGGATGACAATCAAGATGACTATGGCGATAAAGATATAAATATAATCCACTCAGGCAATACAGACCATTTTATAAAGGCAAAAGAATTGTCAATTGAATTACTGGAAAATGACGATGGTGTCTCTCAAAGTAGGGATAACTCTGATGCTACCTGTGGTGAATTTTGCGTACAACCTCCTCCCAAGGAGCTTTTGGATCAAGGACCAACAATCATATATGTAACCACCAGAAAAGAAACACTGAGAATTGCAAAGTATCTATGCAAGTTTGGTGTGAAAGCTGCTGCTTATAATGCAGGGCTGCCCAAGTTGCATCTAAGAAGTGTTCATAAAGAGTTTCATGAAAATAGTATACAGGTTGTTGTTGCGACAGTAGCATTTGGAATGGGGATTGACAAATCAAATGTCAGAAGAATCATCCACTATGGTTGGCCACAGAGTTTGGAAGCATACTACCAAGAAGCTGGACGGGCTGGTCGAGATGGGAAGTTAGCAGATTGCATTCTATATGCAAACCTAGCAAGAAAGCCAAGACTTTTGCCAAGTCGTAGAAGTGAAGATCTAATAAAACAAGCATATGTCATGTTGTCTGATTGTTTCAGATATGGAATGAATACTTCATGCTGTCGAGCAAAGACACTTGTCGAGTACTTTGGAGAGGATTTCAGTCATAAAAAATGTCTCTTATGTGATGTGTGCATTAAAGGACCACCTCAAAGGCAAAATTTAAAAGAGGAGGCTTGCATTTTACTACAAACTATAGGTGTCCATAATGCTTGTAGCTATTCAATGGATTCCTTATATAATGATATCCATTTTGACTCCAAAGATATAAGACAAGGAGAGAGGCCAAGTCTTAGGATTTTAGTTAGGAATATAAGGGAACAGTTTAAAAAGTTTCTAACCACTGATATATTATGGTGGAGTGGTCTTGCTCGAATATTGGAAGTTAAAGGATACATCAGGGAAGGAGATGACAAGTGGAGCAGTGGCACTGGCACTGCTATCTTGTGCTTGTCTTACCATGCATGTGCTACACATGTTCAGATAAAATATCCAGAGCCAACAGAATTGGGATTGGAATTTCTGAAGTCTATGAGTGAGCAAGCTTTCTATGTTTACCCTGAGGCAGATATGTTTCTTGCAAGGAAAACTCACAAACACAAACCATATTCCTCATTCTCAGAATGGGGAAAAGGTTGGGCTGATCCTGAGATCCGTCGCCAGCGCCTGGAAAGAATACAACTCAATAGAAATCCAATGATGCTGCCGAGTCCCAGAAAGAAACCAAAGAGGAAAGCTAGAAAAGAGCAACCTGATCTAAGGACTTCTCGGGGTAGACTGGCAGCAAAGCTCTCAAAATATAAGTGA 2631 0.3987 MNAMTNDNNNISSDQVIAEMLEMGFEYSNILEAIKVVGPSVPSAVEHIFNTTNNRDRETSNTQTYKLRSRNGNSLKKRTFPSSLQAPKSRVLNHYFQSIDKATKSKNNDVVAVDVEEHKEPSLPQIGVDLPGVAQDLDISSVWEQRVSYLLQKHFGFSSLKSFQKEALSTWVANKDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCLKLTSLGISACFLGSGQPDDTVEEKAMKGMYNIIYVCPETIKRLIQSLQKLAESRGIALFAIDEAHCISKWGHDFRPAYSQLSVLRENFSIGKLKSLKFDIPLMALTATATKRVREDILKSLCMSKETNVVLTSFFRSNLRFTVKHSRTSRASYEKDFHELIKVYGREQNIGGKKDFMSDDSDDVSNVSDASRSSDTDSNSSYDVDDNQDDYGDKDINIIHSGNTDHFIKAKELSIELLENDDGVSQSRDNSDATCGEFCVQPPPKELLDQGPTIIYVTTRKETLRIAKYLCKFGVKAAAYNAGLPKLHLRSVHKEFHENSIQVVVATVAFGMGIDKSNVRRIIHYGWPQSLEAYYQEAGRAGRDGKLADCILYANLARKPRLLPSRRSEDLIKQAYVMLSDCFRYGMNTSCCRAKTLVEYFGEDFSHKKCLLCDVCIKGPPQRQNLKEEACILLQTIGVHNACSYSMDSLYNDIHFDSKDIRQGERPSLRILVRNIREQFKKFLTTDILWWSGLARILEVKGYIREGDDKWSSGTGTAILCLSYHACATHVQIKYPEPTELGLEFLKSMSEQAFYVYPEADMFLARKTHKHKPYSSFSEWGKGWADPEIRRQRLERIQLNRNPMMLPSPRKKPKRKARKEQPDLRTSRGRLAAKLSKYK 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi549g00001 876 MobiDBLite consensus disorder prediction 836 876 - -
Sebi549g00001 876 Pfam Helicase conserved C-terminal domain 485 581 IPR001650 -
Sebi549g00001 876 MobiDBLite consensus disorder prediction 389 426 - -
Sebi549g00001 876 SMART helicmild6 501 582 IPR001650 -
Sebi549g00001 876 NCBIfam RecQ family ATP-dependent DNA helicase 150 378 IPR004589 GO:0004386|GO:0006310
Sebi549g00001 876 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 10 51 IPR015940 -
Sebi549g00001 876 FunFam ATP-dependent DNA helicase 466 591 - -
Sebi549g00001 876 FunFam ATP-dependent DNA helicase 131 352 - -
Sebi549g00001 876 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 168 344 IPR014001 -
Sebi549g00001 876 Gene3D - 133 352 IPR027417 -
Sebi549g00001 876 SMART ultradead3 156 361 IPR014001 -
Sebi549g00001 876 MobiDBLite consensus disorder prediction 400 418 - -
Sebi549g00001 876 Gene3D - 465 591 IPR027417 -
Sebi549g00001 876 Pfam RecQ zinc-binding 609 653 IPR032284 -
Sebi549g00001 876 SUPERFAMILY UBA-like 13 54 IPR009060 GO:0005515
Sebi549g00001 876 Gene3D - 594 763 IPR036388 -
Sebi549g00001 876 CDD DEXHc_RecQ 151 351 - -
Sebi549g00001 876 PANTHER DNA HELICASE RECQ FAMILY MEMBER 140 750 - -
Sebi549g00001 876 Pfam DEAD/DEAH box helicase 163 330 IPR011545 GO:0003676|GO:0005524
Sebi549g00001 876 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 480 620 IPR001650 -
Sebi549g00001 876 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 199 592 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi549g00001 Sebi-Chr549 14074 19640 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi549g00001 485 600 Eukaryotic Initiation Factors Gene Family AT5G11170 27.586 1.08e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi549g00001 K10900 - gmx:100793222 1169.45