Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi548g00045 ATGGGCGAGAAGGGTCTCAAGTCTGAAATTGAAGAGGCTACAAATTCCAACTCCGGGGTGCTGGTGGATAATTACATGAAACAATGTTCCAAAGATGATAAGGAAGATAATTTTTCCAACCCTGATGAAAACACAAACACAAACACAAAGGGAAAGACTTTCACTTGCAACTTTTGCAATAAAAAGTTCGCTTGTCCACAAGCATTGGGAGGGCACCAAAACGCACATAGACAAGAGCGAGCACTTGCAAAACGTCTTGAATTCCTTGATTCTATTGGTGATTTTGAGCAACCCAACATTCCTCGTTATGGAGGACCCTTCATTAACAGGGCACTTGATGATTCAGTGATGCGGAAGCCTTCCTACCTTTGGGCCTCAAGTGGATTTAGTTATGGTGATTGTTGGTCTGGGCTTGGAATTATGGGAAGAGACGCAACTCCAATTACAAGGCCACTTTTCCCTAATGCTACTACCAAGTCATTACGTCATGTCATAAACAAACCAACTATGACAACAAGTGATTCCATGCCGGAAGAAACTTCCAATGTAGAATCTTCCAATGTTGATTTGGAACTTAAGCTTTAA 585 0.4171 MGEKGLKSEIEEATNSNSGVLVDNYMKQCSKDDKEDNFSNPDENTNTNTKGKTFTCNFCNKKFACPQALGGHQNAHRQERALAKRLEFLDSIGDFEQPNIPRYGGPFINRALDDSVMRKPSYLWASSGFSYGDCWSGLGIMGRDATPITRPLFPNATTKSLRHVINKPTMTTSDSMPEETSNVESSNVDLELKL 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi548g00045 194 ProSiteProfiles Zinc finger C2H2 type domain profile. 54 81 IPR013087 -
Sebi548g00045 194 Gene3D Classic Zinc Finger 27 92 - -
Sebi548g00045 194 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 24 187 IPR044246 GO:0009788
Sebi548g00045 194 MobiDBLite consensus disorder prediction 169 194 - -
Sebi548g00045 194 MobiDBLite consensus disorder prediction 169 188 - -
Sebi548g00045 194 ProSitePatterns Zinc finger C2H2 type domain signature. 56 76 IPR013087 -
Sebi548g00045 194 SUPERFAMILY beta-beta-alpha zinc fingers 50 81 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi548g00045 Sebi-Chr548 676246 676830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi548g00045 32 145 C2H2 Transcription Factor Family AT5G10970 37.705 1.08e-15 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi548g00045 - - aprc:113850616 112.079