Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi548g00044 ATGAGAACTCTTCTTATTGTGTGCTTGTTCTCGCTGCTTCTTGTGGCTGTGGCCGCCGTGAACCCCTCTCTGAACGACGACGTTCTGGGGTTGATTGTGTTCAAAGCTGACATTCAAGATCCGAAGGGAAAGTTGGCATCTTGGAACGAAGACGATGAGAATGCGTGTGGGGGTAGTTGGGTGGGAGTGAAATGCAACCCTAGATCCAACAGGGTAGTGGAGCTTACACTTGATGGGTTCTCTCTCTCTGGGAAAATTGGTCGAGGCCTTCAGAAATTGCAATTCCTCCGCAAACTTTCTCTGGCGAACAATAACCTCACAGGGGGCATAAGCCCCAACATTGCTCGTATTGATAACCTTCGGGTCCTTGACTTGAGTGACAACAATCTCTCAGGAGAGGTTCCTGATGATTTTTTCAAACAATGTGGGTCTCTCAGGACTGTTTCTTTGGCAAGGAACAAGTTTTCTGGGAGTGTTCCTTCTAGTTTGGGCTCATGCTCAGCTCTTGCTTCTCTTGACATCTCTTTTAACCAGTTTTCAGGTTCTGTTCCTCCTGGGGTTTGGACTTTGAGTGGACTCAGGTCTCTGGATTTGTCTGATAACATGTTGGAGGGTGAGATTCCAAAAGGGGTTGAGGCGTTGAAGAATTTGAGGAGCATTAGTTTGGCGAGAAACCGGTTTTCTGGGAAGATTCCAGATGGGTTTGGAAGTTGCTTGCTTTTGAGGTCTATTGATTTCAGTGAGAATGCTTTCTCTGGTAGTATTCCTGGAGATTTGAAGGAACTGGTGCTGTGTAGTTACTTTAGTTTGTGTGGAAACGCTTTCTCAGGAGAGGTTCCTGAGTGGATTGGAGAGATGAAGGGCCTTGAGACATTGGACCTCTCGCGGAATGGATTTTCTGGTGAGGTGCCAAACTCTATAGGAAATCTTCAGTCATTGAAGATGTTGAACTTTTCTGCAAATGGTTTCACTGGTAATCTGCCAGAGTCTATGGTGAACTGCACTAACCTTGTGGCCTTGGATGTCAGCCGGAATTCACTGTCCGGAGGACTTCCAACATGGATTTTCAAGTCAGATTTGGCACCAGCAAACAGAATGAGTGGTAGCGTGAAGAGCCCTTTGTATTCCTTGGCTGAAACTGCGGTTCAAAGTCTTCAAGTTTTGGATTTATCTCACAATGCATTTTCTGGTGAAATCACGTCTGCTATTGCAGGTTTAAGCAGCTTGCAGATTTTGAATTTATCAAATAACTCTCTAGGAGGTCCTATACCAGCTGCAATTGGTGAACTGAAAACATGTTCTAGTCTTGATTTGAGTTATAATAAGCTAAACGGAAGCATACCTTGGGAAATAGGAGGAGCTCTATCCTTAAAAGTACTAAAATTGGAACATAACTTCCTAGCTGGGAAAATTCCAACCTCACTTGAGAACTGTTCGTCATTAACAACCTTGATTCTGTCCCAGAACAGGCTGAGTGGGTGGATACCTGCAGCAGTTGCAAAGCTTGCTAACCTGCAAATTGTGGACTTATCATTTAACAACCTTACTGGAGCCCTTCCTAAGCAATTGGCCAACCTCCCCAATCTTCTGTCCTTCAATTTATCTCACAACAACCTTCAGGGTGAACTGCCAGCTGGTGGTTTTTTCAACACCATTTCACCTTCTTCTGTTTCTGGCAATCCATTGCTTTGTGGCTCTGCTGTGAACAAATCATGCCCTGCTGTCCTCCCAAAGCCTATTGTTTTGAATCCCAACACTACTACTGACTCTGGTTCAGGTTCACTGCCTCCAAATTTGGGTCACAAAAGAATCATTCTCAGCATTTCTGCACTCATTGCTATTGGTGCAGCTGCTGTCATTGTAATTGGTGTCATTGGCATCACCGTTCTCAACCTCCGTGTTCGGTCCTCCACAGCTCGATCTGCAGCTGCCCTCACATTTTCTGCTGGGGATGAATTCAGCCATTCCCCAACCACAGATGCCAACTCTGGCAAACTTGTCATGTTTTCAGGTGAGCCTGATTTCAGCTCTGGAGCACATGCCTTGCTTAATAAGGATTGCGAGCTTGGGCGTGGAGGGTTTGGGGCTGTATACCAAACGGTTCTCGGAGATGGGCGTTCAGTTGCTATAAAGAAGCTCACGGTATCAAGCCTTGTCAAGTCTCAAGAAGATTTTGAAAGGGAAGTGAAGAAATTAGGAAAGGTCAGACACCAAAATCTTGTGGAACTTGAAGGTTATTATTGGACATCATCACTGCAGCTCCTCATATACGAGTATGTCTCTGGTGGTAGTCTGTATAAACATCTCCATGAAGGATCAGGTGGAAACTTCCTCTCATGGAATGAGAGGTTCAATGTGATTCTCGGCACAGCAAAGGCCTTGGCTCACTTGCACCACTCCAACATCATCCACTACAACATTAAGTCAACCAATGTCCTTCTTGATAGCTATGGTGAACCTAAAGTAGGCGATTTCGGGCTAGCCAGGCTGTTACCAATGCTCGATCGATATGTTTTGAGCAGCAAAATCCAAAGCGCACTTGGCTACATGGCACCAGAATTTGCCTGCAAAACGGTGAAAATTACTGAGAAATGTGATGTTTATGGGTTTGGAGTATTGGTTTTGGAGATTGTTACAGGGAAGAGGCCTGTAGAGTATATGGAGGATGATGTGGTGGTACTTTGTGACATGGTAAGAGGAGCATTGGAAGAAGGAAGGGTAGAGGAATGTGTTGATGAGAGGCTACAAGGGAAGTTCCCAGCAGAGGAAGCAATTCCTGTGATGAAATTAGGCTTAATATGTACTTCTCAAGTGCCATCTAATAGACCCGACATGGGAGAGGTAGTTAACATTCTGGAGCTAATAAGATGCCCTTCAGAAGGACAAGAAGAGTTGGGATGA 2901 0.4512 MRTLLIVCLFSLLLVAVAAVNPSLNDDVLGLIVFKADIQDPKGKLASWNEDDENACGGSWVGVKCNPRSNRVVELTLDGFSLSGKIGRGLQKLQFLRKLSLANNNLTGGISPNIARIDNLRVLDLSDNNLSGEVPDDFFKQCGSLRTVSLARNKFSGSVPSSLGSCSALASLDISFNQFSGSVPPGVWTLSGLRSLDLSDNMLEGEIPKGVEALKNLRSISLARNRFSGKIPDGFGSCLLLRSIDFSENAFSGSIPGDLKELVLCSYFSLCGNAFSGEVPEWIGEMKGLETLDLSRNGFSGEVPNSIGNLQSLKMLNFSANGFTGNLPESMVNCTNLVALDVSRNSLSGGLPTWIFKSDLAPANRMSGSVKSPLYSLAETAVQSLQVLDLSHNAFSGEITSAIAGLSSLQILNLSNNSLGGPIPAAIGELKTCSSLDLSYNKLNGSIPWEIGGALSLKVLKLEHNFLAGKIPTSLENCSSLTTLILSQNRLSGWIPAAVAKLANLQIVDLSFNNLTGALPKQLANLPNLLSFNLSHNNLQGELPAGGFFNTISPSSVSGNPLLCGSAVNKSCPAVLPKPIVLNPNTTTDSGSGSLPPNLGHKRIILSISALIAIGAAAVIVIGVIGITVLNLRVRSSTARSAAALTFSAGDEFSHSPTTDANSGKLVMFSGEPDFSSGAHALLNKDCELGRGGFGAVYQTVLGDGRSVAIKKLTVSSLVKSQEDFEREVKKLGKVRHQNLVELEGYYWTSSLQLLIYEYVSGGSLYKHLHEGSGGNFLSWNERFNVILGTAKALAHLHHSNIIHYNIKSTNVLLDSYGEPKVGDFGLARLLPMLDRYVLSSKIQSALGYMAPEFACKTVKITEKCDVYGFGVLVLEIVTGKRPVEYMEDDVVVLCDMVRGALEEGRVEECVDERLQGKFPAEEAIPVMKLGLICTSQVPSNRPDMGEVVNILELIRCPSEGQEELG 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi548g00044 966 ProSiteProfiles Protein kinase domain profile. 683 955 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi548g00044 966 Pfam Leucine Rich Repeat 456 478 IPR001611 GO:0005515
Sebi548g00044 966 SUPERFAMILY RNI-like 184 546 - -
Sebi548g00044 966 ProSiteProfiles Leucine-rich repeat profile. 119 141 IPR001611 GO:0005515
Sebi548g00044 966 Gene3D Ribonuclease Inhibitor 262 360 IPR032675 -
Sebi548g00044 966 Gene3D Ribonuclease Inhibitor 25 188 IPR032675 -
Sebi548g00044 966 SUPERFAMILY L domain-like 24 260 - -
Sebi548g00044 966 Gene3D Ribonuclease Inhibitor 193 261 IPR032675 -
Sebi548g00044 966 SUPERFAMILY Protein kinase-like (PK-like) 686 956 IPR011009 -
Sebi548g00044 966 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 760 961 - -
Sebi548g00044 966 Pfam Protein tyrosine and serine/threonine kinase 685 951 IPR001245 GO:0004672|GO:0006468
Sebi548g00044 966 CDD STKc_IRAK 689 955 - -
Sebi548g00044 966 Gene3D Transferase(Phosphotransferase) domain 1 760 964 - -
Sebi548g00044 966 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 25 305 - -
Sebi548g00044 966 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 306 576 - -
Sebi548g00044 966 Gene3D Phosphorylase Kinase; domain 1 677 759 - -
Sebi548g00044 966 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 21 952 - -
Sebi548g00044 966 Pfam Leucine rich repeat N-terminal domain 25 66 IPR013210 -
Sebi548g00044 966 SMART LRR_typ_2 382 405 IPR003591 -
Sebi548g00044 966 SMART LRR_typ_2 117 141 IPR003591 -
Sebi548g00044 966 SMART LRR_typ_2 286 310 IPR003591 -
Sebi548g00044 966 SMART LRR_typ_2 502 525 IPR003591 -
Sebi548g00044 966 SMART LRR_typ_2 190 213 IPR003591 -
Sebi548g00044 966 SMART LRR_typ_2 406 430 IPR003591 -
Sebi548g00044 966 SMART LRR_typ_2 214 238 IPR003591 -
Sebi548g00044 966 SMART LRR_typ_2 526 550 IPR003591 -
Sebi548g00044 966 ProSitePatterns Protein kinases ATP-binding region signature. 689 712 IPR017441 GO:0005524
Sebi548g00044 966 Gene3D Ribonuclease Inhibitor 361 575 IPR032675 -
Sebi548g00044 966 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 677 759 - -
Sebi548g00044 966 Pfam Leucine rich repeat 119 179 IPR001611 GO:0005515
Sebi548g00044 966 Pfam Leucine rich repeat 384 443 IPR001611 GO:0005515
Sebi548g00044 966 Pfam Leucine rich repeat 288 347 IPR001611 GO:0005515
Sebi548g00044 966 Pfam Leucine rich repeat 480 539 IPR001611 GO:0005515
Sebi548g00044 966 PRINTS Leucine-rich repeat signature 120 133 - -
Sebi548g00044 966 PRINTS Leucine-rich repeat signature 406 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi548g00044 Sebi-Chr548 657308 660981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi548g00044 9 966 Receptor kinase-like Gene Family AT3G56370 68.634 0.0 1291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Sebi548g00044 PK_Tyr_Ser-Thr 5.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi548g00044 - - gmx:100791629 1609.73