Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi548g00042 ATGGCTTCTGCCTCTGCAGCAGGTTCCTCTTCTTGGTCATCTTCAAATTGGGTCATGGAAAGTGGTGATGTTCCTCATGTTTTGGCTGTTGATGACAATCTCATTGACCGCAAACTTGTTGAGAAACTCCTAAGGAATTCTTCTTGCAAGGACAAAAAAGAAAATGGGCCAAGGGCATTGGAGTTCTTGGGCTTAACAAGTGGTGAACAGGACAATGCTACTTTTTGCTGCTCTGCAGAGATCCAAAGTAAATTTGTTATCACAGACTATTGCATGCCAGGGATGACAGGCTATGAGTTACTTAAGAAAATTAAGGAATCATCTGTAATGAAGGAGGTTCCAGTAGTGATCATGTCATCTGAGAACATACCAACACGGATTAACAAGTGTCTGGAAGAAGGAGCTCAGATGTTCATGTTAAAGCCCCTCAAACAATCTGATGTAAAAAAACTGACCTGTCAGTTAAAGAACTTAGGAAGGTGA 483 0.4141 MASASAAGSSSWSSSNWVMESGDVPHVLAVDDNLIDRKLVEKLLRNSSCKDKKENGPRALEFLGLTSGEQDNATFCCSAEIQSKFVITDYCMPGMTGYELLKKIKESSVMKEVPVVIMSSENIPTRINKCLEEGAQMFMLKPLKQSDVKKLTCQLKNLGR 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi548g00042 160 Gene3D - 23 158 - -
Sebi548g00042 160 PANTHER TWO-COMPONENT RESPONSE REGULATOR 25 155 IPR045279 GO:0009736
Sebi548g00042 160 Pfam Response regulator receiver domain 27 150 IPR001789 GO:0000160
Sebi548g00042 160 CDD REC_typeA_ARR 27 151 - -
Sebi548g00042 160 ProSiteProfiles Response regulatory domain profile. 26 156 IPR001789 GO:0000160
Sebi548g00042 160 Coils Coil 148 160 - -
Sebi548g00042 160 SMART REC_2 25 152 IPR001789 GO:0000160
Sebi548g00042 160 SUPERFAMILY CheY-like 25 149 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi548g00042 Sebi-Chr548 605406 606615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi548g00042 1 157 Response Regulator Gene Family AT3G56380 61.635 3.69e-56 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Sebi548g00042 Response_reg 1.4e-15 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi548g00042 K14492 - gmx:100499827 234.958