Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi548g00021 ATGGGGAGGAGACCTGCAAGGTGTTATCGGCAGATAAAAAATAAGCCATATCCCAAATCACGCTTCTGTCGTGGTGTTCCTGATCCCAAGATCAGAATTTATGATGTTGGTATGAAGAGAAAAGTTGTTGACGAGTTTCCTTTCTGCGTCCATCTGGTTAGTTGGGAGAAGGAAAATGTTTCAAGTGAGGCATTGGAAGCTGCTAGGATTGCATGCAACAAATATATGGCTAAATTTGCTGGAAAGGATGCTTTCCACTTGAGAGTCAGAGTACATCCGTTCCATGTTCTTAGGATCAACAAAATGCTTTCATGTGCTGTAGCTGATAGGCTTCAGACTGGGATGAGAGGTGCGTTTGGAAAGCCATAG 369 0.4336 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKRKVVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAVADRLQTGMRGAFGKP 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi548g00021 122 Gene3D Ribosomal protein L10e/L16 1 122 IPR036920 GO:0003735|GO:0005840|GO:0006412
Sebi548g00021 122 Pfam Ribosomal protein L16p/L10e 12 120 IPR016180 GO:0003735|GO:0005840|GO:0006412
Sebi548g00021 122 PANTHER 60S RIBOSOMAL PROTEIN L10 1 122 IPR001197 GO:0003735|GO:0005840|GO:0006412
Sebi548g00021 122 CDD Ribosomal_L16_L10e 41 122 IPR016180 GO:0003735|GO:0005840|GO:0006412
Sebi548g00021 122 SUPERFAMILY Ribosomal protein L16p/L10e 4 122 IPR036920 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi548g00021 Sebi-Chr548 308441 309382 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi548g00021 1 121 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 94.215 5.41e-83 240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi548g00021 K02866 - cit:102625379 251.136