Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi548g00011 ATGGAGACTCTGAAAGCTGCGATTCCTGAAGGCCTGAAGCGAGTGATTGGGGAGAGTACAGTCGATGATCTTCGCAGCACGTGTTCTTCTCTTCATCGCTTCTTTCTTCATTTCGAGCCATTTCACCAGATGGTGACTGAATTGGCTGACCCGAAGTATGCTCTGTGCGGCAAGAATAAGGACGCTGCATTAAAATCCAAGCAGCTTGGCAATCACTGCTTCTCGAACGCAGATTACGCGAAGGCTTTGGATTGCTATACTCAGGCATTGCGCAAGGCTCCTTTCGAGGCTGGTCACACGGGAAATAATCTCATCGCGTCGTTGTATATTAATCGAGCTACTGTATTGCATAAAATGAGTCTTTTAATGGAATGTTTACGAGATTGCAATCGTGCTCTTCAGATATGTCCAAGCTATGCCAAGGCATGGTATAGGAGAGGTAAGGCCAATGCTTCATTGGGGAATTATAAAGATGCCATTTGTGACCTAAATGTGGCTAAGATTGCGGAATCATCAATGGGTGGGAAGAGACAAATAGAAAGTGAGCTGAAAATTATTATAGACCAATGCAACACAAGTACAGTAGTACAGCTACAACATAAGGAGAACAGCTTGAATACAGTGGGTGAGATGCCCCAAATAAAACTACAGTGTGTCTCAATGCCTGATAAAGGAAGAGGCATGGTGTCGTCATGTGATATTTCACCTGGTTCTTTGGTTCATGTTGAAGAGCCTTATGCTACGATAATATTAAAGCAATGCCGGGAAACTCATTGTCATTATTGCTTGAATGACCTACCTGCTGATAGAGTTCCTTGTACATCATGTTCAATACCATTGTACTGCTCACACCAATGCCAGATACGGGCAGGTGGGCAAATGTTCAGAATTGGCCCAGGTGATAATGGCATTCTTAAAAACTTACCCAGCGATCTTGGAGAATATGCTGCTGAAGTTATTCAATACAATGATTCTGAACAAGAGATTGAGGATATTACTGAACATAAACATGAATGTCATGGTGTACATTGGCCTGCTGTATTGCCGTCTGAGATTGTTTTGGCTGGCCGGATACTAGCAAGGTTTTTGTCAAAGAGCAGACCTGAAGATATTACAAACATTGTAGAAAAGCTGGGGCTTTCTCATTCTTACAAACATATGCCATTTGAAAGCAAATTGGATTCACATATATATGCCATTGTGTTATTATATTGTCTTCAACACTCTTATGGGACCATGTTTTCCATAGATGGAATCTCTATGTCAAAGGTTGTCATTATTATTTCCCAAATTAAAGTGAATTGTATGACTGTTGTTCGATTGAAATCAATAGATGCTCATGGACTATCAGATCAGTCTGGAACATTTGCATTCCGGTCCAGTGTACATTTAACTAATAATGTGGAACAGGTCAGAGTGGGTAAAGCTATTTATAAAGCTGGCAGTTTATACAACCATTCTTGCCAACCAAATGTTCATGCATACTTTCTCTCACGCACTCTTTATTTACGAACCACAAAAGTTGTAGCTGCTGGACATGAGCTGGAATTGTCTTATGGTCCACAGGTTGGGTTGTGGGATTGTAAAGATCGTTGTAATTTTCTTAAAGATGAATACGCGTTTCATTGTCAGTGTAGCGGTTGTTCAGAAGTCAATCTATCTGACATTGTCCTCAATGCTTTTCATTGTGTCAATCCAAATTGTTCTGGTGCAGTGTTGGAAAGCAGAGTACTTGACAATGAAAAGCAGAAAACCAAAAACTTCCCTATTGTTGGCAAAGTTGACAAGAATGGTGACATTTATGGAGTAGGTCTTCATGCATTCAACCAAAATGATGCCTCTATTCATATTCAACCTGGATGCTGTTTGAAATGTGGTTCTTACTGTGATTTGGATTCTTCACGTGCTGCAGTAAATAAAGCCTTAATATGCATAAAAAGGTTGCAGGATGCAATACTGTCAAGAGAAATTTCAAATACTTCTATTTCAGATGCTTTGAGATCTCTACATTTGCTGAGATCAAATTTACATGCATACAACAAGCTTATTGCAGAGGCAGAAGATAACCTTGCCCAGGCTTTTTGTTTAGTGGGAGAATTACAATTATCTGTGGATCATTGTAAAGCATCTATCCAGATTCTGGAGAAGCTATATGATCCTGATGATATTGTTATTGCTTATGAACTTGTGAAGCTTTCTTCCATCCAACTTTCCTTGGATGATGTTACTGTTGTGGACAGCATAAGTCGAATAGGTGATATCTTCTCATGTTATTATGGCCTTCATGCAAACTTGGTCTTCCCCTGTCTTCAATACCTTCGGAGAGAAATTGAGAATTTTTCAGTGAAGGCCCTCCAATCAAATGCTTTTCCAGCAAAGTGA 2382 0.4001 METLKAAIPEGLKRVIGESTVDDLRSTCSSLHRFFLHFEPFHQMVTELADPKYALCGKNKDAALKSKQLGNHCFSNADYAKALDCYTQALRKAPFEAGHTGNNLIASLYINRATVLHKMSLLMECLRDCNRALQICPSYAKAWYRRGKANASLGNYKDAICDLNVAKIAESSMGGKRQIESELKIIIDQCNTSTVVQLQHKENSLNTVGEMPQIKLQCVSMPDKGRGMVSSCDISPGSLVHVEEPYATIILKQCRETHCHYCLNDLPADRVPCTSCSIPLYCSHQCQIRAGGQMFRIGPGDNGILKNLPSDLGEYAAEVIQYNDSEQEIEDITEHKHECHGVHWPAVLPSEIVLAGRILARFLSKSRPEDITNIVEKLGLSHSYKHMPFESKLDSHIYAIVLLYCLQHSYGTMFSIDGISMSKVVIIISQIKVNCMTVVRLKSIDAHGLSDQSGTFAFRSSVHLTNNVEQVRVGKAIYKAGSLYNHSCQPNVHAYFLSRTLYLRTTKVVAAGHELELSYGPQVGLWDCKDRCNFLKDEYAFHCQCSGCSEVNLSDIVLNAFHCVNPNCSGAVLESRVLDNEKQKTKNFPIVGKVDKNGDIYGVGLHAFNQNDASIHIQPGCCLKCGSYCDLDSSRAAVNKALICIKRLQDAILSREISNTSISDALRSLHLLRSNLHAYNKLIAEAEDNLAQAFCLVGELQLSVDHCKASIQILEKLYDPDDIVIAYELVKLSSIQLSLDDVTVVDSISRIGDIFSCYYGLHANLVFPCLQYLRREIENFSVKALQSNAFPAK 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi548g00011 793 Gene3D Tetratricopeptide repeat domain 38 191 IPR011990 GO:0005515
Sebi548g00011 793 SUPERFAMILY TPR-like 58 166 IPR011990 GO:0005515
Sebi548g00011 793 Gene3D SET domain 419 519 IPR046341 -
Sebi548g00011 793 Pfam Tetratricopeptide repeat 68 97 IPR019734 GO:0005515
Sebi548g00011 793 SUPERFAMILY SET domain 208 550 IPR046341 -
Sebi548g00011 793 Coils Coil 669 689 - -
Sebi548g00011 793 SMART tpr_5 140 173 IPR019734 GO:0005515
Sebi548g00011 793 SMART tpr_5 106 139 IPR019734 GO:0005515
Sebi548g00011 793 SMART tpr_5 684 717 IPR019734 GO:0005515
Sebi548g00011 793 SMART tpr_5 63 96 IPR019734 GO:0005515
Sebi548g00011 793 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 779 - -
Sebi548g00011 793 Pfam SET domain 225 520 IPR001214 GO:0005515
Sebi548g00011 793 Gene3D Tetratricopeptide repeat domain 525 779 IPR011990 GO:0005515
Sebi548g00011 793 ProSiteProfiles SET domain profile. 212 520 IPR001214 GO:0005515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Sebi548g00011 SET 3.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi548g00011 K24634 - gmx:100783548 1290.4