Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi548g00008 ATGGCTCCCAGCAGACCTCAAAAGGTAGTGCAAATGGAAGAAGAAGAAGATGGGCATGATGATGAGCCCAAGAAAAATGTGGTCAGAACATTGTCATTCTTTAAACTGTTGAGCTATGCTGACTTAGTGGATTGGATTCTAATGGGTTTGGGAGTTGTAGGCTCCATTGTGCATGGTATGGCACTTCCTGTTGGGTACCTATTGTTAGGAAAAGCTCTTAATGCTTTTGGGGACAATATTAATGACCAAGATGCCATGGTCGATGCTCTTAAACAAGTTGTTCCATTTGTGTGGTACATGGCCATAGCCACATTTCCTGCTGGGGTACTTGAAATTGGTTGTTGGATGTATACAAGTGAAAGACAGTTATTACGCCTAAGATTAGCATATCTAAGAGCAGTCCTGAGCCAAGAGATAGGGGCTTTTGATACAGAACTAACAGGTGGAAAAGTCATCACTGGAATAAGCAAGCACATGAGTGTCATACAAGATGCCATTGGTGAGAAGCTGGGTCACTTCACCTCTAGCTGTGCAACTTTCTTTGCTGGAATTGTTATTGCTACCATATGTTGTTGGGAAGTGGCACTTCTGTGTTTAGTGGTTGTCCCGCTTATTCTTATAATTGGGGCAACATATACCAAGAAAATGAACACCATATCAACCACCAAATTGCTTTACCATTCTGAAGCTACATCTATGATAGAGCAGACAATATCACATATTAAAACAGTATATGCTTTTGTTGGAGAGAGCACTGCCATCAAATCCTTCACAGAGAACATGGATAAACAGTACATTATAAGCAAAGGGGAGGCACTTGTGAAGGGAGTTGGAACAGGGATGTTTCAAACTGTGAGTTTCTGTTCTTGGGCTCTCATTATATGGGTTGGAGCAGTTGTGGTCAGAGCCGGGAGGGCAAAGGGAGGAGACATAATAGCTGCAGTGATGAGTATTCTTTTTGGTGCTATATCTCTCACATATGCAGCACCAGACATGCAAATATTCAATCAGGCAAAGGCTGCAGGATATGAGGTTTTCCAAATGATCCAAAGAGAGCCACTAATAAAAAATGAACCAAAAGGGAAGATGCCTAGGAAAATTAAAGGTGACATTGAGCTACGAGATGTCTACTTTTCCTACCCATCAAGGCCAGAGAAACCTATCCTTCAAGGACTGTCCTTGTCAATTCCAGCTGGAAAGACAGTAGCACTAGTTGGTACCAGCGGGTGTGGAAAGAGCACTGTTATTTCCCTGGTTACCAGATTTTATGACCCCCTGAGAGGAGAAATTTTGATTGATGGTCACAAAATCAAGGATCTAGATCTGAAGTTTCTGAGAAGAAATATAGGAGCTGTTTCCCAAGAACCATCACTCTTTGCAGGCACCATCAAGGATAACTTGAAGCTGGGAAAAATGGATGCAAATGACGAAGAGATACAGAAGGCGACAGTAATGTCAAATGCACACACTTTCATATCACAGCTGCCTAATCAGTACCTAACAGAGGTAGGACAAAGGGGCGTCCAATTATCAGGAGGTCAGAAACAGAGAATTGCAATAGCAAGAGCCATTCTGAAAAATCCTCCCATCCTTTTGCTTGATGAGGCCACTAGTGCCCTTGATACAGAGTCAGAAAAGCTGGTTCAAGAAGCACTTGAGACAGCTATGCAGGGAAGGACTGTCATCTTGATTGCACATAGGCTCTCAACGGTTGTAAATGCAGACATGATTGCTGTAGTGGAAAATGGACAAGTTGTAGAGACAGGAACACACCAGAGTTTGTTAAACACAAGCAAATTCTATAGTACGTTATTCAGCATGCAGAACCTTGAAAAACCAGTTCCAGAATCCAGAACTACAATTTCCAAAAATAGAAGTGCCCGCCAAGAAGATATTATTCCTGATGAAATTAGACCACCACAAGAGACCCAGAAAGAGGTCCAAAGAACTCTCCCTGAGCATTCTGTACTAAAGGAACAGAACAAGTCAAGCACAAGAGAAAGAAATATATTTTTCAGAATTTGGTTTGATTTAAAAAAGAAGGAGCTGGTGAAGATTGCTATTGGCTCGCTTGCAGCAGCTTTCTCTGGCATCTCAAAGCCATTTTTTGGATTCTACATCATCACCATTGGAGTAGCATACTTTCATGAAGATGCAAAGCGGAAAGTTGGATATTTTTCAGCCATTTTCTCTGCAATAGGGTTGCTTTCATTATTTAGCCACACCTTCCAGCATTACTTCTTTGGAATGGTTGGAGAAAAGGCCATGGCAAATCTCAGACGTGCTCTCTATTCAGGTGTGCTTCGGAATGAAGTAGGCTGGTTTGACAAATCTGAGAACACTGTTGGCTCATTAACTTCACGCATTATCAGTGATACTTCCATGGTCAAAATCATAATTGCTGATCGCATGTCCGTGATTGTGCAATGTGTTTCCTCCATACTGATAGCAACAGTTGTCAGCATGATTGTCAACTGGAGAATGAGTTTGGTAGCTTGGGCTGTGATGCCCTGCCACTTCATAGGTGGTCTCATTCAAGCCAAGTCTGCCAAAGGGTTTTCAGGTGACTACTCCACTGCACATTCTGTGCTTGTTGCTCTTGCATCGGAGTCTGCAACCAACATAAGGACTATTGCATCATTTTGTCATGAAGAGGAAATACTGAAGAAAGCCAAAACATCTCTGGAAATTCCAATGAAGAAGTACAGGAATGAAAGTATCAAATATGGTATCATTCAAGGTTTCTCCCTTTGCTTGTGGAACATTGCACATGCTGTTGCTTTGTGGTACACAACAATTCTGGTTGACAGACGTCAAGCCTCCTTTGAAAATGGAATAAGATCATACCAAATTTTTTCTCTCACAGTGCCTTCTATCACGGAATTATACACACTGATCCCAACTGTCATCTCTGCTATCAATATACTAACCCCAGCATTCAAAACCCTTGACCGTAAAACTGAAATTGAACCAGATAAACCGGATGATTCCCAGCCTGAGAGGATCCAAGGAACTGTTGAATTTGATCATGTAATATTCAACTACCCTTCAAGACCTGCAGTCACTGTTCTTGACAATTTCAGTTTACAAATTGAAGCTGGATTGAAAGTGGCTTTTGTAGGACCAAGTGGCGCTGGAAAATCCTCTGTTTTGGCCCTTTTACTAAGATTTTATGATCCAGGTGCAGGAAAGGTATTAATTGATGGGAAAGACATACGGGATTATAATCTAAGATGGTTAAGGACACAAATAGGGCTGGTACAGCAAGAGCCACTGCTTTTTAACTGCTCGATTAGCGACAATATTTGCTATGGCAATAATGGGGCTTCTGAAAGTGAAATAGTGGAGGTTGCCAGAGAAGCAAACATACATGAATTTGTGAGTAATCTGCCAAATGGATATAACACTGTTGTAGGAGAGAAAGGCTGCCAGCTTTCAGGAGGACAAAAGCAAAGAATAGCCATTGCCAGAACCTTACTAAAGAAGCCTGCAATACTGCTCCTTGACGAAGCAACAAGTGCTCTTGATGCTGAGTCTGAAAGAATTATAGTAAATGCTTTAAAAGCAATGAACCTGAAAGAAGACAGTGGCTTGTGTTCAAGAACCACCCAGATCACAGTAGCTCATAGACTTTCCACAGTAATAAACTCAGATACCATAATTGTCATGGATAAAGGTAAAATTGTAGAGATGGGCTCCCACTCAACCTTAATAGCAGAAGATGTGGGGCTTTATTCTAAGTTATTCAGGTTACAGAGCTTTGAAGAAGCCTCATAG 3777 0.4157 MAPSRPQKVVQMEEEEDGHDDEPKKNVVRTLSFFKLLSYADLVDWILMGLGVVGSIVHGMALPVGYLLLGKALNAFGDNINDQDAMVDALKQVVPFVWYMAIATFPAGVLEIGCWMYTSERQLLRLRLAYLRAVLSQEIGAFDTELTGGKVITGISKHMSVIQDAIGEKLGHFTSSCATFFAGIVIATICCWEVALLCLVVVPLILIIGATYTKKMNTISTTKLLYHSEATSMIEQTISHIKTVYAFVGESTAIKSFTENMDKQYIISKGEALVKGVGTGMFQTVSFCSWALIIWVGAVVVRAGRAKGGDIIAAVMSILFGAISLTYAAPDMQIFNQAKAAGYEVFQMIQREPLIKNEPKGKMPRKIKGDIELRDVYFSYPSRPEKPILQGLSLSIPAGKTVALVGTSGCGKSTVISLVTRFYDPLRGEILIDGHKIKDLDLKFLRRNIGAVSQEPSLFAGTIKDNLKLGKMDANDEEIQKATVMSNAHTFISQLPNQYLTEVGQRGVQLSGGQKQRIAIARAILKNPPILLLDEATSALDTESEKLVQEALETAMQGRTVILIAHRLSTVVNADMIAVVENGQVVETGTHQSLLNTSKFYSTLFSMQNLEKPVPESRTTISKNRSARQEDIIPDEIRPPQETQKEVQRTLPEHSVLKEQNKSSTRERNIFFRIWFDLKKKELVKIAIGSLAAAFSGISKPFFGFYIITIGVAYFHEDAKRKVGYFSAIFSAIGLLSLFSHTFQHYFFGMVGEKAMANLRRALYSGVLRNEVGWFDKSENTVGSLTSRIISDTSMVKIIIADRMSVIVQCVSSILIATVVSMIVNWRMSLVAWAVMPCHFIGGLIQAKSAKGFSGDYSTAHSVLVALASESATNIRTIASFCHEEEILKKAKTSLEIPMKKYRNESIKYGIIQGFSLCLWNIAHAVALWYTTILVDRRQASFENGIRSYQIFSLTVPSITELYTLIPTVISAINILTPAFKTLDRKTEIEPDKPDDSQPERIQGTVEFDHVIFNYPSRPAVTVLDNFSLQIEAGLKVAFVGPSGAGKSSVLALLLRFYDPGAGKVLIDGKDIRDYNLRWLRTQIGLVQQEPLLFNCSISDNICYGNNGASESEIVEVAREANIHEFVSNLPNGYNTVVGEKGCQLSGGQKQRIAIARTLLKKPAILLLDEATSALDAESERIIVNALKAMNLKEDSGLCSRTTQITVAHRLSTVINSDTIIVMDKGKIVEMGSHSTLIAEDVGLYSKLFRLQSFEEAS 1258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi548g00008 1258 MobiDBLite consensus disorder prediction 9 23 - -
Sebi548g00008 1258 MobiDBLite consensus disorder prediction 615 660 - -
Sebi548g00008 1258 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 362 608 IPR027417 -
Sebi548g00008 1258 Gene3D - 361 609 IPR027417 -
Sebi548g00008 1258 SUPERFAMILY ABC transporter transmembrane region 35 358 IPR036640 GO:0005524|GO:0016020
Sebi548g00008 1258 CDD ABC_6TM_Pgp_ABCB1_D1_like 48 345 - -
Sebi548g00008 1258 Gene3D ABC transporter type 1, transmembrane domain 35 960 IPR036640 GO:0005524|GO:0016020
Sebi548g00008 1258 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 687 971 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi548g00008 1258 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 371 607 IPR003439 GO:0005524
Sebi548g00008 1258 MobiDBLite consensus disorder prediction 623 660 - -
Sebi548g00008 1258 Pfam ABC transporter 1024 1173 IPR003439 GO:0005524
Sebi548g00008 1258 MobiDBLite consensus disorder prediction 1 23 - -
Sebi548g00008 1258 CDD ABC_MTABC3_MDL1_MDL2 1006 1252 - -
Sebi548g00008 1258 Pfam ABC transporter 389 538 IPR003439 GO:0005524
Sebi548g00008 1258 FunFam ABC transporter B family member 4 361 616 - -
Sebi548g00008 1258 ProSitePatterns ABC transporters family signature. 510 524 IPR017871 GO:0005524|GO:0016887
Sebi548g00008 1258 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1006 1250 IPR003439 GO:0005524
Sebi548g00008 1258 SMART AAA_5 398 590 IPR003593 GO:0016887
Sebi548g00008 1258 SMART AAA_5 1033 1227 IPR003593 GO:0016887
Sebi548g00008 1258 SUPERFAMILY ABC transporter transmembrane region 678 992 IPR036640 GO:0005524|GO:0016020
Sebi548g00008 1258 ProSitePatterns ABC transporters family signature. 1145 1159 IPR017871 GO:0005524|GO:0016887
Sebi548g00008 1258 PANTHER ABC TRANSPORTER B FAMILY 8 739 IPR039421 -
Sebi548g00008 1258 CDD ABC_6TM_Pgp_ABCB1_D2_like 680 989 - -
Sebi548g00008 1258 FunFam ABC transporter B family member 1 996 1253 - -
Sebi548g00008 1258 Gene3D - 996 1257 IPR027417 -
Sebi548g00008 1258 Pfam ABC transporter transmembrane region 49 322 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi548g00008 1258 Pfam ABC transporter transmembrane region 688 950 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi548g00008 1258 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 50 337 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi548g00008 1258 CDD ABC_MTABC3_MDL1_MDL2 371 608 - -
Sebi548g00008 1258 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 998 1252 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi548g00008 Sebi-Chr548 162600 170163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi548g00008 21 1254 Calmodulin-binding Proteins AT2G36910 41.204 0.0 962
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi548g00008 K05658 - qsa:O6P43_014878 1878.6