Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi547g00013 ATGCATTTCCCATCCACTATTCCTCTTTGGCTCTCCTATTTATTCATCTCCTTTGTTCTCACCAATGGCTACCAAGCTGAGCCTACAAATGGAGACAACAAAGTTATATCTATTGGTGCAATGATTGATGTTAACTCTCGTATTGGGAAAGAACAACGAGTAGCCATGGATATTGCAGCTCAAAGATACAACAATACTTCAAAAACCCACAAGCTGGCTCTTCATTTTCAAGAACCCACCAAGGATCCCTTCAGAGCCACTTCTCTTGCTGAAGAGATGATTAAAACTCAAAAGGTGCAAGTGATTGTAGGGATGAACACATGGGCAGAAGCAGCTTCAGTAGCTGAATTAGTACACCAAACTCGAGTTCCTATCATATCCTTTGTAGCACCAACCATTACCCCACCATTGATGCAAATTCGGTGGCCTTATTTGGTAAAAATGGCTAACAATGGTACTGCATATGTAAAATGCATTGCAGATATGGTGCATGCTTATGGTTGGCAAAAATTAGTAGCCATCTATGAAGATGATACCTATGGTGGAGATTTTGGGATGCTAGCACTGCTATCTGAGGCCCTCCAAGATGTTGGTTCAATGATTGAATACCGTTTAGCTCTGCCATCACATTCTTATCTGCCTAATCCTGGAGAGTTTATTCAAGAAGAGCTGTCTAAGTTAACAAAAAATACACCATCTAGAGTGTTCATTGTTCTTCAATCATCATTAGATATGGTGATTCATTTGTTCAGAGAAGCTTCACAAATGGGACTTGTGGATAAAGAATCAGCTTGGATAATCCCAGAGAGCATAACTAATTTGTTGGACTCTGTCAATAAGTCTGGTACTTCCTATATGCAAGGAGCTTTAGGAATCAAGACATACTTCTCTGAAAATAGCAGTGAGTATCAACATTTTGAGGCTCAATTCAGGAGAACTTTTCGGTACAAGCATCCTGAGGAAGAACAAGGTGGAAATAGTACTTTTAGGAACACAGAAAGTTTGAGTGGTGTAGTGATTTGGCCTGGAAAAACAACTAGAGTTCCAAAGGGCTGGAATATGCCTACTAAACAAAATCCAATGAAAATTGCAGTTCCTGGAAGAACAGCATTTTCCAAGTTTGTCAAGGTTGATTATGATGAGCATGAAAAGCGATATAAGTATTCCGGATTTTGCATTGAAATTTTTGAGGAGGTGTTAGGACTTTTGGAGTATGATCTGCCATATGAATATTATCCCATCAATGGGACCTATCCTGATCTGGTTCAACTTGTGTATAACAAGACTTATGATGCTGTTGTTGGCGACATGACCATACTGGCAGAGAGATTGCAATATGTGGATTTCACTGTGCCATATACAGAATCAGGATTGTCAATGGTAGTTACAGAAAGGTCCCAAGAATCCACATGGATGTTTATGAAGCCCTTCACCTGGCAAATGTGGGCAGTAACTGGTGCCATCTTGATTTACACAATGTTAGTAGTGTGGTACTTGGAGAGGGATTCCAATCCAGAGTTTGAAGGCAATTGGAAAGTGCAGATCAGCACTGCTCTTTGGTTTACTTTCTCCTCTCTATTCTTTGCTCATAGGGAGAAAATGTATAGCAACTTATCTCGTGTAGTCATGGTATCATGGCTCTTTCTAGTTTTGATTCTAAACTCAAGCTACACTGCGAGTCTTTCTTCAATGCTCACAGTTCAACAACTGAAACCAAATGTCACAGACATTGAGTGGCTGAAGAAGAACAACATGAAAATTGGTTGTGATGGAGATTCATTTGTTAGGACATACTTAGAGAAAGTCGAAACATTCAAACCAGAGAACATTGTAAACATTAATAGTGAATTCAGTTATGTCAGTGCATTCAAAACCGACTCAATAGCAGCTGCTTTCCTGGAACTCCCTTATGAAAAAGCATACATCAGCAAATACTGCAAAGGGTACTCTGGCTCTACACCTACCACCAAATTTGGAGGACTGGGATTTATGTTCCAGAAAGGCTCCCCCCTGGCCAAAGATGTTTCTAAAGCTATTTTGCAACTCTTAGAGGTGGGGGAACTGCAGAGGTTAGAAGAGAAATGGTTGAAGCCCTCAGGGGAGTGCTACAACAATTTGACCTCCGAGAGTACAGAAAGTTTGAAGCTTGGAAGCTTCTGGATTCTCTACGTGATTTCTGGTGCCACTTCTACTATTTGTTTTCTACTTTCTACCATCCATTCGCTAAAATCAAGCCTAAGATGCCCAAATGATAGGAGCCCGTGGAAAAGGGTGGTTAAGTTAACTAGAAAGATTTGTAGCAGAAAGCATAATAAAGAGACTACGGCACAGAAAGATGTTGTTACTTCCGGATGGGATTGTATCAGTATCACTGACAACCCTGAGCATCAGCAGGCAATGTCTCTTCAATTACCAGAAATCATAACTGTCTCTTCCCCACCAACACAGTTGTAA 2454 0.4046 MHFPSTIPLWLSYLFISFVLTNGYQAEPTNGDNKVISIGAMIDVNSRIGKEQRVAMDIAAQRYNNTSKTHKLALHFQEPTKDPFRATSLAEEMIKTQKVQVIVGMNTWAEAASVAELVHQTRVPIISFVAPTITPPLMQIRWPYLVKMANNGTAYVKCIADMVHAYGWQKLVAIYEDDTYGGDFGMLALLSEALQDVGSMIEYRLALPSHSYLPNPGEFIQEELSKLTKNTPSRVFIVLQSSLDMVIHLFREASQMGLVDKESAWIIPESITNLLDSVNKSGTSYMQGALGIKTYFSENSSEYQHFEAQFRRTFRYKHPEEEQGGNSTFRNTESLSGVVIWPGKTTRVPKGWNMPTKQNPMKIAVPGRTAFSKFVKVDYDEHEKRYKYSGFCIEIFEEVLGLLEYDLPYEYYPINGTYPDLVQLVYNKTYDAVVGDMTILAERLQYVDFTVPYTESGLSMVVTERSQESTWMFMKPFTWQMWAVTGAILIYTMLVVWYLERDSNPEFEGNWKVQISTALWFTFSSLFFAHREKMYSNLSRVVMVSWLFLVLILNSSYTASLSSMLTVQQLKPNVTDIEWLKKNNMKIGCDGDSFVRTYLEKVETFKPENIVNINSEFSYVSAFKTDSIAAAFLELPYEKAYISKYCKGYSGSTPTTKFGGLGFMFQKGSPLAKDVSKAILQLLEVGELQRLEEKWLKPSGECYNNLTSESTESLKLGSFWILYVISGATSTICFLLSTIHSLKSSLRCPNDRSPWKRVVKLTRKICSRKHNKETTAQKDVVTSGWDCISITDNPEHQQAMSLQLPEIITVSSPPTQL 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi547g00013 817 Pfam Ligand-gated ion channel 698 727 IPR001320 GO:0015276|GO:0016020
Sebi547g00013 817 Gene3D - 31 156 - -
Sebi547g00013 817 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 37 321 IPR015683 -
Sebi547g00013 817 SMART GluR_14 362 698 IPR001320 GO:0015276|GO:0016020
Sebi547g00013 817 Pfam Bacterial extracellular solute-binding proteins, family 3 386 697 IPR001638 -
Sebi547g00013 817 FunFam Glutamate receptor 470 600 - -
Sebi547g00013 817 SUPERFAMILY Periplasmic binding protein-like I 33 319 IPR028082 -
Sebi547g00013 817 Gene3D - 641 703 - -
Sebi547g00013 817 FunFam Glutamate receptor 662 695 - -
Sebi547g00013 817 SUPERFAMILY Periplasmic binding protein-like II 337 697 - -
Sebi547g00013 817 PIRSF IGluLR_plant 5 330 IPR017103 -
Sebi547g00013 817 PIRSF IGluLR_plant 318 805 IPR017103 -
Sebi547g00013 817 CDD GluR_Plant 359 696 - -
Sebi547g00013 817 Gene3D - 368 469 - -
Sebi547g00013 817 FunFam Glutamate receptor 360 471 - -
Sebi547g00013 817 Gene3D - 470 607 - -
Sebi547g00013 817 Gene3D - 157 364 - -
Sebi547g00013 817 FunFam Glutamate receptor 155 324 - -
Sebi547g00013 817 Pfam Receptor family ligand binding region 54 325 IPR001828 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi547g00013 Sebi-Chr547 613730 617565 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi547g00013 326 736 Ion Channels AT2G29120 40.431 2.72e-90 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi547g00013 - - lang:109350412 1008.44