Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi547g00012 ATGCATTTCACATCCACAAATCCTCAACCTCTTGCAGGATTTTGGCTCTCATATTTATTCATCTCCTTTCTTCTCATTATTGGCTACCAAGCTGACCCTACAAATGGAGACAACAAAGTTATTTCTATAGGTGCAATCATTGACCTTAACTCTCGTGCTGGGAAAGAAGAGAAAGTAGCTATTGAACTTGCAGCTCAAAATTACAACAACAATTCAAAGTACCACAAGCTGACTCTACATTTCAAGGACTCCGGAGGGGTGGCCCTCAGAGCAATTTCTATTGCTGAAGAGATGATAAAAATAAAGAAAGTGGAAGTGATAATTGGTATGCACTCATGGCAGGAAGCAATTTTGGTAGCTGAGGTTGGGAGTCAAGCTCAAGTTCCTGTTATTTCATTTGCTTCACCAATCACTACCCCCTCATTGTTTTCATTTCGTTGGCCTTTCTTAATGCTAATGGCTCATAATAGTACTGCATATGTCAAATGCATTTCTGATATAGTTCAAGCATACAATTGGAAAAGAGTTATAGTGATTTATGAAGAGGATGCATATGGTAGTGATTATGGGATGTTTGCACTTCTATCTGAGGCACTCCATAATGTTGGCTCTCAGATTGAGCTCTCTTTGGCTCTCCCTCCTTATTCTTCTCTGTCTAATCCTAGTGGGGTAGTTCAAGTAGAGTTGCTGAAGCTGCTTAATACTCAATCTCGTGTCTTCATAGTTCTACAATCATCACTACCTATGGTAACTTGTTTGTTTGCAGAAGCTAAAAAGATGGAACTCTTAGATAGGGAAACAGCTTGGATAGTTCCAGAAAGCATAACTCACATGCTTGACTCTGTTAGTGAATCTGTCATTTCCTCCATGGAAGGTGTTTTAGGAATAAAGACTTACTACTCACAAAATAGTACTGATTTTCAGAGTTTCCAAGTCCAGTTCAGGAAAGCTTTTCAAAAGGAAAATCCAGAAGAAGAAAACCCCAAACCTGGATTTTATGCACTTCAAGCATATGATAGCATTAGAGTTGTTACAAGTGCCATGGAGACATTAAGAAATCATACCAGCAGCCCTAAGATATTTCTAAAAGAAATGCTGTCTTCCAATTTCCTTGGTTTAAGTGGAAAAATAAAATTTGAACATCAGCAGACCTTGCCCTCTCCTATACTTAGGATTGTAAATGTGATTGGAAAGAGTTACAAAGAAATTGACTTTTGGACAGAAGAGTATGGATTCTCCAAAACCCTTTCCTTTGAATTAGCTGGTCAGGCAGTAAAAAATAATGAGGTCACCAGTACAACAGAAGGTTTGGCAGGTCCAATAATTTGGCCTGGGAATGTAATGAGCACTCCAAAGGGTTGGAGAATGCCTACAAGAGCAAAACCATTGAAAATTGCTGTTCCAAGAAAGACTCCATTTGAGAAGTTTGTGAAGTATGATCTACCATATGAAATAGTTCCCGTTAATGCAACCTACCGGGATCTGGTTTTTCTTGTTTATAATAAGACTTTCGATGCTGTTGTTGGTGACATAACCATTTTGGCTGACAGAATGCAATACGTGGATTTTACACTGCCATATACAGAGTCAGGATTGTCAATAATAGTTCCAGCAAAATCTGAGGATACAGCTCTAATTTTTATGAAGCCCTTTACTTGGGAAATGTGGATGGTTACTGTTTCCATTCTCATTTACACCATGTTGGCAGTTTGGTACTTGGAGAGGGATTCCAATCCAGAATTCAATTGTCCATGGAAGAATCAGATTAGCATTGCTCTATGGTTTACTGTCTTTTCTCTATTATTTGCCCACAGGGAGAAAATCTATAGCAACTTCACTCGAATGGTGATTGTTGTGTGGCTCTTCCTTGGTTTGATCCTAACCTCAAGCTACACTGCTAATTTATCCTCAATGCTCACTGTTCAACAATTGCAACCAAATGTTAAAAACATTGAGTCACTTAAATGGAGCAACTCCAAAGTCGGCTTCTCAGATGATCCATTTGTAAGAAAATATCTAGAAAACGTGCTTCATTTCAAATCACAGAATATTATTGAAGTTAGCGGGGACTACAATTACATTGAGGATTTCAAAAACAAGCGCATAGCAGCTGCTTTTATTGAAATCCCCTATGAAAAGGTATTCATCAGCAAGAACTGCCGGGGATACTCTGCCTTCACTCCTACCAACAGATTTGGAGGGCTAGGCTTTATGTTCCAGAAAGGTTCTCCAATTACCAGAGACTTTTCCAAAGCTATATTGCAGCTCTCAGAGAATGGAGACACGAAGTTACTAGAAGATAAATGGTTGAACAACCCAGATGAGTGTTCAACCAATATAACTACCAATGCCAACGGAAGCTTGAAGCTTCAAAGCTTCTGGGTTGTTTTTGCTGCATCTGTTTTCACTTCTACCTTTTGTGTGACAATATCCAAGGTACTGTCAATGAAAAGTAGTCAGCAGCATCAAGAGGCATTTGAAGGCAATCATGCTTGTTCAACTATTGTGACTGTTTGGAAGAAGGTGCTCACTCTACGGAAGTATATATACTATTCTAAAAACACTAATCAAAGGCAAGCTCCAAATGCAGCACATATAGAGGATGTAGAAGAATTTTGTTTGGAGCTTGAACAAGGAAGCACACCTGACACTGTAGCTGGAAATCAGGCTTTGCCACCACCAGAGAACTCTGCCTCGCCATAA 2703 0.3922 MHFTSTNPQPLAGFWLSYLFISFLLIIGYQADPTNGDNKVISIGAIIDLNSRAGKEEKVAIELAAQNYNNNSKYHKLTLHFKDSGGVALRAISIAEEMIKIKKVEVIIGMHSWQEAILVAEVGSQAQVPVISFASPITTPSLFSFRWPFLMLMAHNSTAYVKCISDIVQAYNWKRVIVIYEEDAYGSDYGMFALLSEALHNVGSQIELSLALPPYSSLSNPSGVVQVELLKLLNTQSRVFIVLQSSLPMVTCLFAEAKKMELLDRETAWIVPESITHMLDSVSESVISSMEGVLGIKTYYSQNSTDFQSFQVQFRKAFQKENPEEENPKPGFYALQAYDSIRVVTSAMETLRNHTSSPKIFLKEMLSSNFLGLSGKIKFEHQQTLPSPILRIVNVIGKSYKEIDFWTEEYGFSKTLSFELAGQAVKNNEVTSTTEGLAGPIIWPGNVMSTPKGWRMPTRAKPLKIAVPRKTPFEKFVKYDLPYEIVPVNATYRDLVFLVYNKTFDAVVGDITILADRMQYVDFTLPYTESGLSIIVPAKSEDTALIFMKPFTWEMWMVTVSILIYTMLAVWYLERDSNPEFNCPWKNQISIALWFTVFSLLFAHREKIYSNFTRMVIVVWLFLGLILTSSYTANLSSMLTVQQLQPNVKNIESLKWSNSKVGFSDDPFVRKYLENVLHFKSQNIIEVSGDYNYIEDFKNKRIAAAFIEIPYEKVFISKNCRGYSAFTPTNRFGGLGFMFQKGSPITRDFSKAILQLSENGDTKLLEDKWLNNPDECSTNITTNANGSLKLQSFWVVFAASVFTSTFCVTISKVLSMKSSQQHQEAFEGNHACSTIVTVWKKVLTLRKYIYYSKNTNQRQAPNAAHIEDVEEFCLELEQGSTPDTVAGNQALPPPENSASP 900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi547g00012 900 SUPERFAMILY Periplasmic binding protein-like I 38 454 IPR028082 -
Sebi547g00012 900 PIRSF IGluLR_plant 11 481 IPR017103 -
Sebi547g00012 900 PIRSF IGluLR_plant 477 888 IPR017103 -
Sebi547g00012 900 CDD PBP1_GABAb_receptor_plant 42 416 IPR044440 -
Sebi547g00012 900 Gene3D - 43 387 - -
Sebi547g00012 900 Pfam Receptor family ligand binding region 58 396 IPR001828 -
Sebi547g00012 900 Pfam Ligand-gated ion channel 772 800 IPR001320 GO:0015276|GO:0016020
Sebi547g00012 900 MobiDBLite consensus disorder prediction 881 900 - -
Sebi547g00012 900 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 42 818 IPR015683 -
Sebi547g00012 900 SMART GluR_14 464 772 IPR001320 GO:0015276|GO:0016020
Sebi547g00012 900 FunFam Glutamate receptor 160 328 - -
Sebi547g00012 900 SUPERFAMILY Periplasmic binding protein-like II 439 772 - -
Sebi547g00012 900 Gene3D - 463 543 - -
Sebi547g00012 900 Gene3D - 156 408 - -
Sebi547g00012 900 Pfam Bacterial extracellular solute-binding proteins, family 3 481 771 IPR001638 -
Sebi547g00012 900 FunFam Glutamate receptor 544 682 - -
Sebi547g00012 900 Gene3D - 686 778 - -
Sebi547g00012 900 Gene3D - 544 677 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi547g00012 Sebi-Chr547 413839 511835 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi547g00012 15 864 Ion Channels AT2G29100 31.614 4.40e-129 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi547g00012 - - qsa:O6P43_031906 1023.46