Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi547g00011 ATGGAGTGCTCTGTTTGTTTAACCACTATTGAGGAAGATGCAATGATTAGGGTGCTTCCGAATTGTAAGCATGTGTTCCATGTTGATTGTGTTGATATGTGGTTCAGTTCCAATAGCACTTGCCCTGTTTGTCGTGCCGTGGTTGAACTTGAACCCATGGTTTTGGACACACAGGTCCAAGTCCAACCCACTGCGCCAATATTAGTTGAGGATGATGGTGTGTCGTTGCAGGATGCAAATCATGAAGTGGAAATGGTGGGTTGTTCAGGCTTGAGAATTGCTTCTTTTCCTAGGATGGTTATTAGCAGGGAAAGGTCGAGAAAAGATCAGAGCTTTGATGAGTCTGTTTCAATAGAAGATGTAGAGAAGCCGTAA 375 0.4373 MECSVCLTTIEEDAMIRVLPNCKHVFHVDCVDMWFSSNSTCPVCRAVVELEPMVLDTQVQVQPTAPILVEDDGVSLQDANHEVEMVGCSGLRIASFPRMVISRERSRKDQSFDESVSIEDVEKP 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi547g00011 124 SUPERFAMILY RING/U-box 2 51 - -
Sebi547g00011 124 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 2 72 - -
Sebi547g00011 124 Pfam Ring finger domain 2 45 IPR001841 -
Sebi547g00011 124 ProSiteProfiles Zinc finger RING-type profile. 3 45 IPR001841 -
Sebi547g00011 124 SMART ring_2 3 44 IPR001841 -
Sebi547g00011 124 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 49 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi547g00011 Sebi-Chr547 396228 396602 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi547g00011 2 111 C3H Transcription Factor Family AT2G42350 43.750 2.34e-21 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi547g00011 K19038 - gmx:100779105 132.88