Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi547g00002 ATGCTTGTCGTTTCCGTTCCCGTTTTGAATGATTTAGACGCCATGAAGAAAGCTTGGGATGAGTTTTTCTCCTTTCAAAATAGGAATTCCAGGATCTTTGATTGGGAAATTCCCCTATCCCTATCCCAGGAAAGAGAACAAGCACTGAGGTCGTTCAAGAGTGGAAACACACCAATTCTAGTGGCAACGAAAGTTGCAGCACGTGGTCTCGATATTCCAAGGGTAGCACATGTGGTAAATTTTGATCTCCCCAATGACATTGATGATTATGTGCACAGGATAGGAAGAACAGGGCGAGCTGGTAAAATGGGATTAGAAACAGCCTTCTTCAATGACAGTAATTTGTCCTTGGCTAAACCATTGGCTGATCTGATGCAAGAGGCAAATCAAGAAGTACTTGGAATTGGAGAAATAATTATTGGAGAAATAA 430 0.4163 MLVVSVPVLNDLDAMKKAWDEFFSFQNRNSRIFDWEIPLSLSQEREQALRSFKSGNTPILVATKVAARGLDIPRVAHVVNFDLPNDIDDYVHRIGRTGRAGKMGLETAFFNDSNLSLAKPLADLMQEANQEVLGIGEIIIGEI 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi547g00002 143 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 140 IPR001650 -
Sebi547g00002 143 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 43 132 - -
Sebi547g00002 143 SMART helicmild6 27 101 IPR001650 -
Sebi547g00002 143 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 43 131 IPR027417 -
Sebi547g00002 143 CDD SF2_C_DEAD 40 110 - -
Sebi547g00002 143 Pfam Helicase conserved C-terminal domain 42 101 IPR001650 -
Sebi547g00002 143 Gene3D - 28 134 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi547g00002 Sebi-Chr547 140077 140799 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi547g00002 43 109 Eukaryotic Initiation Factors Gene Family AT5G11170 49.254 4.80e-17 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi547g00002 K11594 - csin:114306398 167.162