Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi546g00020 ATGGCACCAAGCAAACCAGAAATACAAAATAATTCAGTTTCTGGGTCTGGCCAGTTTAACTATACTAATGCATCTCAGTCTGTCAGAGAACAAAGGAGATCAGAAGATGGGTTCAACTGGAGAAAATATGGACAGAAACAAGTAAAAGGAAGCAAAAATCCATGCAGTTATCACAAATGCACACACCCAAATTGCTCAATAAGGAAGAAAGTTGAGAGATCTTGGATGGACAAATTACTGAAATAG 246 0.378 MAPSKPEIQNNSVSGSGQFNYTNASQSVREQRRSEDGFNWRKYGQKQVKGSKNPCSYHKCTHPNCSIRKKVERSWMDKLLK 81
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi546g00020 81 MobiDBLite consensus disorder prediction 1 53 - -
Sebi546g00020 81 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 31 77 IPR044810 GO:0003700
Sebi546g00020 81 ProSiteProfiles WRKY domain profile. 29 77 IPR003657 GO:0003700|GO:0006355|GO:0043565
Sebi546g00020 81 MobiDBLite consensus disorder prediction 1 28 - -
Sebi546g00020 81 Pfam WRKY DNA -binding domain 35 74 IPR003657 GO:0003700|GO:0006355|GO:0043565
Sebi546g00020 81 Gene3D WRKY domain 23 80 IPR036576 GO:0003700|GO:0006355|GO:0043565
Sebi546g00020 81 SMART WRKY_cls 34 81 IPR003657 GO:0003700|GO:0006355|GO:0043565
Sebi546g00020 81 SUPERFAMILY WRKY DNA-binding domain 30 77 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi546g00020 Sebi-Chr546 353391 353636 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi546g00020 29 81 WRKY Transcription Factor Family AT2G38470 67.925 8.20e-21 82.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Sebi546g00020 WRKY 6.2e-18 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi546g00020 K13424 - gmx:100792833 128.257