Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi545g00021 ATGAACCCTGACATTAATCTTGAAATATCCTTGAGCTTACCCTCTCATCCAGATGAATCATCACCATATGAGTTTGGAACCAATTCTGCTACATTAATTAATGCAGATAATCACAATAGGGAACTAAGATATGTGGTGGAAGAACAACGTGAGGATACCAGCGTCGCAACAAACGCTGTGCCCTTTTCGTTCAAGAGAAGTTCTACTGATTCTGGGAGAGAATTCCATATAGGTGAAAGTTCAAACATGGGTTCTCAAGTTGAAATAGCCAAACGACACGTTGGTGCCCCTTCCCATGATAATGTGATCAACACATCACCATTAAGCATTGATCCTACATCTGCAAATAGTCAACCAAGAGGCTTTAGAGGTGCAACATCAGTTTCTGAGATGCAAGATGGACAAAGTGAAAGCAATACTAATTTGCAGATCATACCTGCTGCTACTATTGAACAAGATTTTGTACGTCCCAATCCTGACAGATTTTCAAGCAGCTACACAAGAGGTCTACAAGTTCATTCACTTGGCCATGTACCTTTGGTTTCACAGCTTGAGCATCCTCCTTTTTTTAACCACTTAGAAAGTTCAAATGGAGCAAGTTCCTCAAGACAGCCAACCGAGATTAATGCTCCTACTTTTCTTCGTGACCTAAGTGGTTCCCCTTCGATTACCAATATGAATATAAGGAATCCTATTGCGATAAATATCATCGACACTTCTCAAATTGGAAGAAATGAAGATAGGGAATCATTTCATACAAGGCTTGGAGAGATTAGGCAAAGATCAATGCACATATCCGAGATTCATGATGGTGAAAATGATGAACAACCACCACCTCGAGTTCCTAGTATTGCTGAAATGAGAAACGATATAGAGGCTCAGGCTCAAGCTGCTTTGGAACGTTTACACTCTGATCAAGTTCTACGAGTTCAGGATATGATTGCCATCAACCGTTCACTTGCAATACATATGATTGAGGCCCAGGTTGCTGATGTAGTTGGGGAATTTGAGGATTTGATGTTACAGGCCCAGGTTGCTGATGTAGTTGGGGATTTTGAGGACATGGAAATGATGATTCTTGGACTACGAGAGGAGTTAATTATGAAGTACATTAAGATTGAAAAGTTTGTGCGGGGAGATAAGGAGACTCAAGAAGCGTGTTGCATATGTCAGGAAGAATATGCCAACGGAGTAGAAGTTGGAAAGTTGGATTGTGAGCACATATTTCATATTGAGTGCATAAAACAATGGCTCAACCAGAAGAATGAATGTCCTATTTGCAGAAAAAAGGCATTAGAGACTTTCGAATGA 1311 0.4043 MNPDINLEISLSLPSHPDESSPYEFGTNSATLINADNHNRELRYVVEEQREDTSVATNAVPFSFKRSSTDSGREFHIGESSNMGSQVEIAKRHVGAPSHDNVINTSPLSIDPTSANSQPRGFRGATSVSEMQDGQSESNTNLQIIPAATIEQDFVRPNPDRFSSSYTRGLQVHSLGHVPLVSQLEHPPFFNHLESSNGASSSRQPTEINAPTFLRDLSGSPSITNMNIRNPIAINIIDTSQIGRNEDRESFHTRLGEIRQRSMHISEIHDGENDEQPPPRVPSIAEMRNDIEAQAQAALERLHSDQVLRVQDMIAINRSLAIHMIEAQVADVVGEFEDLMLQAQVADVVGDFEDMEMMILGLREELIMKYIKIEKFVRGDKETQEACCICQEEYANGVEVGKLDCEHIFHIECIKQWLNQKNECPICRKKALETFE 436
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sebi545g00021 436 Pfam Ring finger domain 386 428 IPR001841 -
Sebi545g00021 436 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 95 432 IPR045191 GO:0061630
Sebi545g00021 436 MobiDBLite consensus disorder prediction 97 139 - -
Sebi545g00021 436 ProSiteProfiles Zinc finger RING-type profile. 387 428 IPR001841 -
Sebi545g00021 436 SMART ring_2 387 427 IPR001841 -
Sebi545g00021 436 MobiDBLite consensus disorder prediction 99 139 - -
Sebi545g00021 436 SUPERFAMILY RING/U-box 379 432 - -
Sebi545g00021 436 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 367 433 IPR013083 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Sebi545g00021 Sebi-Chr545 465007 469246 Dispersed/Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi545g00021 288 434 C3H Transcription Factor Family AT2G15530 32.051 8.93e-20 90.1
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi545g00021 - - lang:109350901 115.546