Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi545g00020 ATGGTGGGTTTAGAAAGTGTTGAGGCTGAGTTGCTGCAAAGGTACAACCCAGGTGTGGATTTCAGCCAAGGAAGTAGTCTGGTTTTCATTCCAGGGAAAGATCGAACGAGACAACTTAATAGCGGTTCAAACAATCAAAACCAAATAAGCCCTAATCTATCAGTTGGAGGGTCGCATTCTTCAAGTTCTCTCATTGCTGAAAGTGGTCAAAGGTTCCCAGATAGGCTTTTTGGGCTAAATATTGATCTTTCTCCTCAAGGGATTAGTGCTAATATTGTTCCCAATAATGGTTTCAATGCTTGTGCTCCTCTCCATGAATCCACTATTGGGACAGAATTGAACATTCCTTCTTTAAGCAATTCCCTTACTATAAGCCCTCAAATGCTTCAAAATAACATTCGTGGATTAGCTCAAAGACAAGATAGAGTGATGAACCCTGACATTAATCTTGAAATATCCTTGAGCTTACCCTCCCATCCAGATGAATCATCACCATATGAGTTTGGAACCAATTCTGCTACATTAATTAATGCAGATAATCACAATAGGGAACTAAGATATGTGGTGGAACAACAACGTGAGGATACCAGCGTCGCAACAAACGTTGTGCCCTTATCGTTCAAGAGAAGTTCTACTGATTCTGGGAGAGAATTCCATATAGGTGAAAGTTCAAACATGGGTTCTCAAGTTGAAATATCCAAACGACACGTTGGTGCCCCTTCCCATGATAATATGATCAACACATCACCATTAAGCATTGATCCTACATCTGCAAATAGTCAACCAAGAGGCTTTAGAGGTGCAACATCAGTTTCTGAGATGCAAGATGGACAAAGTGAAAGCAATACTAATTTGCAGATCATACCTGCTGCTACTATTGAACAAGATTTTGTACGTTCCAATCCCGACAGATTTTCAAGCAGCTACACAAGAGGTCTACAAGTTCATTCACTTGGCCATGTACCTTTGGTTTCACAGCTTGAGCATCCTCCTTTTTTTAACCACTTAGAAAGTTCAAATGGAGCAAGTTCCTCAAGACAGCCAACCGAGATTAATGCTCCTACTTTTCTTCGTGACCTAAGTGGTTCCCCTTCGATTACCAATATGAATATAAGGAATCCTATTGCGATAAATATCATCGACACTTCTCAAATTGGAAGAAATGAAGATAGGGAATCATTTCATACAAGGCTTGGAGAGATTAGGCAAAGATCAATGCACATATCTGAGATTCATGATGGTGAAAATGATGAACCACCACCACCTCGAGTTCCTAGTATTGCTGAAATGAGAAACGATATAGAGGCTCAGGCTCAAGCTGCTTTGGAACGTTTACACTCTGATCAAGTTCTACGAGTTCAGGCCCAGGTTGCTGATGTAGTTGGGGAATTTGAGGATTTGATGTTACAGGCCCAGGTTGCTGATGTAGTTGGGGATTTTGAGGACATGGAAGTGATGATTCTTGGACTACGAGAGGAGTTAATTATGAAGTACATTAAGATTGAAAAGTTTGTGCGGGGAGATAAGGAGACTCAAGAAGCGTGTTGCATATGTCAGGAAGAATATGCCAACGGAGTAGAAGTTGGAAAGTTGGATTGTGAGCACATATTTCATATTGAGTGCATAAAACAATGGCTCAACCAGAAGAATGAATGTCCTATTTGCAGAAAAAAGACATTAGAGACTTTCGAATGA 1695 0.4047 MVGLESVEAELLQRYNPGVDFSQGSSLVFIPGKDRTRQLNSGSNNQNQISPNLSVGGSHSSSSLIAESGQRFPDRLFGLNIDLSPQGISANIVPNNGFNACAPLHESTIGTELNIPSLSNSLTISPQMLQNNIRGLAQRQDRVMNPDINLEISLSLPSHPDESSPYEFGTNSATLINADNHNRELRYVVEQQREDTSVATNVVPLSFKRSSTDSGREFHIGESSNMGSQVEISKRHVGAPSHDNMINTSPLSIDPTSANSQPRGFRGATSVSEMQDGQSESNTNLQIIPAATIEQDFVRSNPDRFSSSYTRGLQVHSLGHVPLVSQLEHPPFFNHLESSNGASSSRQPTEINAPTFLRDLSGSPSITNMNIRNPIAINIIDTSQIGRNEDRESFHTRLGEIRQRSMHISEIHDGENDEPPPPRVPSIAEMRNDIEAQAQAALERLHSDQVLRVQAQVADVVGEFEDLMLQAQVADVVGDFEDMEVMILGLREELIMKYIKIEKFVRGDKETQEACCICQEEYANGVEVGKLDCEHIFHIECIKQWLNQKNECPICRKKTLETFE 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi545g00020 564 SMART ring_2 515 555 IPR001841 -
Sebi545g00020 564 Pfam Ring finger domain 514 556 IPR001841 -
Sebi545g00020 564 MobiDBLite consensus disorder prediction 210 229 - -
Sebi545g00020 564 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 489 560 IPR013083 -
Sebi545g00020 564 ProSiteProfiles Zinc finger RING-type profile. 515 556 IPR001841 -
Sebi545g00020 564 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 179 558 IPR045191 GO:0061630
Sebi545g00020 564 MobiDBLite consensus disorder prediction 37 64 - -
Sebi545g00020 564 SUPERFAMILY RING/U-box 507 560 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi545g00020 Sebi-Chr545 442877 449869 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi545g00020 464 562 C3H Transcription Factor Family AT2G15530 39.048 4.64e-18 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi545g00020 - K22753 lang:109350901 113.62