Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi543g00039 ATGGCTTCTAATATATCAAGATCTGTAAGTGTTATATGTCCTCCCAGATTTCGTGATGATGTTGAAACAGAGAAGTTAAAGAAAAGCCAAGAAGATCACTTGTCAATGCTAGCCTATGAGATGAGTGATGAACAGAAGCTTGGAAAGGATGAAGATGAAATAGGGAATTCATTGGATGGAAGAGAACTTTCCAGGGTTTTTTCTGAGGATTATGATGCAGCAGAGATATTGATATTGGATCCTAGGGGGCCAAGAGTAAATAGATGGAACAAAGTTTTCTTAGCAGCTTGTTTGATTTCATTATTTGTGGATCCACTATTCTTTTACTTACCAGTGGCTAAGAAAGAAAAGTGCATTGATATGTCTGCTGGTCTTGAAATATCCCTTACCATAATTCGGTCAATGATTGATGCATTTTATATTATTCAGATTTATGTTAGGTTTCAAACTGCTTATATAGCTCCTTCCTCTCGTGTTTCTGGTAGAGGAGAGCTTATTATAGACTCTTCAAAGATTGCATCAAAGTACTTACGTAGAGACTTTTGGTTTGATCTAATGGCTGCCCAACCACTACCACAGGTACTGATTTGGGCTGTAATTCCAAGTCTAAAGGGGTCACAAATGATTGCTTCAAGGCAAATTTTGCGCCTTGCTACCATTTTCCAGTACCTCCTGAGGTTGTATCTTATTTATCCTCTATCTTCTGAAATCATCAAGGCGAATGGGGTAATGATGGAAAAAGCTTGGGCTGGGGCAGCATATAATTTGACTCTCTATATGCTGGCAAGTCATGATGAATGTTGGAAGAAGGCTTGTACACTTCAGTACCCACATTGCCAGTATCATTATCTTGATTGTCAAAGCATAGGTGACCCAGATAGGACTGCTTGGTTCAGATCAAGCAATCTCTCAGGTCTATGTGATCAGAACAGTGATTTCTTTCAATTTGGCATTTTTGCTGATGCTCTCACTATGAAAATTACCAGCTCAAAATTCTTCAACAAATACTATTACTGTCTTTGGTGGGGACTGAGGAATCTAAGCTCTGTAGGACAGAATCTCTTAACAAGCACACATGTTGCAGAGATAAATTTTGCTGTGATTGTTGCAATTCTTGGATTGGTGCTTTTTGCACTGCTTATAGGCAATATGCAAACCTACCTGCAATCCACCACTTTGCGGCTAGAAGAATGGAGAATAAGAAGGACAGATACAGAAAGATGGATGCATCACAGGCAACTCCCTCATTACCTGAAGCAAAATGTGCGACGTCATGACCAATTCAGATGGGTAGCTACAAGGGGAGTAGATGAGGAAGCTATTCTCAGAGACCTTCCTGTGGATCTCAGACGTGACATTAAACGCCACCTTTGCCTTAATCTAGTTAGACAGGTACCACTATTTGATCAGATGGATGAGAGGATGCTAGATGCAATATGTGAAAGGTTGAAGCCTTCTCTGTGCACCCCAGGAACATGCCTAGTTCGTGAAGGTGACCCTGTCAATGAGATGCTCTTTATTGTTAGAGGACGCTTAGATTCTTGTACCACTAATGGTGGCAGAACTGGGTTCTTTAACTCATGCAGAATTGGCTCTGGTGACTTCTGTGGTGAAGAGCTTTTGCCATGGGCCTTAGACCCTCGTCCAATAGTTGTCCTTCCTTCCTCAACTCGCACAGTGAAAGCCATCACTGAAGTGGAAGCTTTTGCACTCATTGCTGAGGACTTGAAGTTTGTGGCAGCACAATTCCGCAGGTTACACAGCAAACAACTTAGGCACACATTTAGGTTCCACTCCCATCAATGGAGAACATGGGCTGCATGCTTTATACAAGCAGCTTGGTTCAGATATAAAAGAATGAAAGAGACAATTGAGCTCAAGAGAAAGGAGGATCTGATGATGGCTTATGTACCTGGAATTGGCAATGAACATTTCTCTGCTCCTCTGCAGGGCCCAATGGGCTCAAGTTTTTCAATGTATGCTGCAAAAATCACAGCTAGCCCAAGGAAAGGTAGGAGCTTGAGATATGGTTCTGAACTAGACATTCTTGGGGCATTAAGGAAGCCCCTTGAACCAAACTTCAATGATGATGATAGTTGA 2100 0.4157 MASNISRSVSVICPPRFRDDVETEKLKKSQEDHLSMLAYEMSDEQKLGKDEDEIGNSLDGRELSRVFSEDYDAAEILILDPRGPRVNRWNKVFLAACLISLFVDPLFFYLPVAKKEKCIDMSAGLEISLTIIRSMIDAFYIIQIYVRFQTAYIAPSSRVSGRGELIIDSSKIASKYLRRDFWFDLMAAQPLPQVLIWAVIPSLKGSQMIASRQILRLATIFQYLLRLYLIYPLSSEIIKANGVMMEKAWAGAAYNLTLYMLASHDECWKKACTLQYPHCQYHYLDCQSIGDPDRTAWFRSSNLSGLCDQNSDFFQFGIFADALTMKITSSKFFNKYYYCLWWGLRNLSSVGQNLLTSTHVAEINFAVIVAILGLVLFALLIGNMQTYLQSTTLRLEEWRIRRTDTERWMHHRQLPHYLKQNVRRHDQFRWVATRGVDEEAILRDLPVDLRRDIKRHLCLNLVRQVPLFDQMDERMLDAICERLKPSLCTPGTCLVREGDPVNEMLFIVRGRLDSCTTNGGRTGFFNSCRIGSGDFCGEELLPWALDPRPIVVLPSSTRTVKAITEVEAFALIAEDLKFVAAQFRRLHSKQLRHTFRFHSHQWRTWAACFIQAAWFRYKRMKETIELKRKEDLMMAYVPGIGNEHFSAPLQGPMGSSFSMYAAKITASPRKGRSLRYGSELDILGALRKPLEPNFNDDDS 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi543g00039 699 ProSiteProfiles cAMP/cGMP binding motif profile. 467 552 IPR000595 -
Sebi543g00039 699 Gene3D Helix hairpin bin 395 458 - -
Sebi543g00039 699 Pfam Ion transport protein 89 394 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Sebi543g00039 699 Gene3D - 97 391 - -
Sebi543g00039 699 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 63 653 - -
Sebi543g00039 699 CDD CAP_ED 467 598 IPR000595 -
Sebi543g00039 699 Gene3D Jelly Rolls 465 585 IPR014710 -
Sebi543g00039 699 SUPERFAMILY cAMP-binding domain-like 397 589 IPR018490 -
Sebi543g00039 699 SUPERFAMILY Voltage-gated potassium channels 80 389 - -
Sebi543g00039 699 SMART cnmp_10 467 598 IPR000595 -
Sebi543g00039 699 FunFam Cyclic nucleotide-gated ion channel 1 465 583 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi543g00039 Sebi-Chr543 533856 538458 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi543g00039 55 697 Ion Channels AT2G28260 62.861 0.0 863
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi543g00039 K05391 - gmx:100815543 1194.1